Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02247 ATGCCTGCTCATCCTTCTTCTCTTTCTCCCTCCCTCGCTTTCATCTTCCTTGCTCTTCTTCCTCTGCTGTCCCTCGCCAACACTGATCCTACCGATGTTCAAGCTCTCGAGGTTATGTACAATGCGTTGAATAGTTCAACTGAGTTAACGGGTTGGAGAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACTTGTGAAGGTTCAGCCGTTGTTTCCATTGAGCTGTCAGGATTAGGACTCGATGGGACTCTGGGGTACCTGCTTTCGGACCTTATGTCACTCAGAAAGCTTGACTTGAGTGACAACAAGATCCATGATACAATTCCCTACCAGTTGCCGCCAAATCTTACAAGCCTGAATCTTGCAAGAAACAATTTATCTGGAAATCTTCCCTATTCCTTTTCTGCAATGGCTTCTCTCAATTATTTGAATTTAAGCAATAATGCACTCTCCATGACAGTTGGCGATGTTTTTGCTAATCTTTCAGATCTAGATACCCTGGATCTATCTTTCAATAACTTCTCCGGGGATCTTCCTCCTTCATTTGGAGGACTGGCCAATCTTTCTTCTCTTTTCTTGCAGAAAAACCAGTTGACTGGTTCTCTTAGTGTTCTCGTTGGTTTGCCTTTGGATACTTTAAATGTTGCTAACAATAATTTCAGTGGATGGCTACCTCGTGAGATTACTTCCATACATCATTTCATATATGATGGAAATTCATTTGAGAACACTCCTGCTCCTCTTCCACCAGCAGTAACTTCTCCTCCCAGTGGATCTCATGGTCATCATCATTCTGGATCTGGCTCACATAATAAAACACAAGCCTCTGATAATGAAAATTCTGATGGCCATACGGGTTTGTCAGTGGGGGCTGTTGTCGGCATTGTGTTAGGTTCAGTAGTGGTGGCTGCCATTTTACTGCTTGCTTTTGTTTTCTGCATCCGAAAGCAAAAGGGGAAGAAAAAGGGTGCAAGGAATTTTAGTGGGAGCCTTCCTCGTGGTGTTATTAATGTAACTCCTCAGATGCAAGAGCAGAGGGTAAAGAGCGCTGCTATTGTTACAGACCTGAAGCCACGTCCAGCAGAAAATGTATCAGTTGAGAGATTACCTACTAAAAGTGGATCAGTAAGGCATATGAAGTCCCCTATAACTTCAACGTCGTACACAATTGCTTCTCTCCAAAGTGCTACAAATAGCTTTAGTCAAGAATTTATAATTGGTGAAGGTTCTCTTGGCCGTGTCTACAAGGCTGATTTCCCAAATGGGAAGGAAATGGCTATCAAGAAGATCGACAACTCTGCACTGTCATTACAGGAGGAAGACAATTTTCTCGAAGCTGTTTCAAATATGTCGCGCCTGCGGCACCCAAACATAGTGACATTGACCGGATATTGTGCTGAGCATGGCCAACGACTTCTAGTTTATGAGTATATAGGAAATGGAAATCTGCATGACATGCTCCATTTTGCTGAAGAAAACAGCGGCAAGGCTTTATCTTGGAATGCTCGTGTTCGCATAGCACTCGGCACAGCCCGAGCATTAGAGTACTTGCATGAAGTGTGCTTGCCCTCTGTTGTGCATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGTTAAATCCTCACCTCTCTGATTGTGGTTTAGCTGCTTTGACACCAAACACAGAGCGGCAGGTATCGACTCAGATGGTCGGTTCATTTGGTTACAGTGCTCCTGAATTTGCATTATCAGGAGTATACACCGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTGGAACTGTTGACTGGTCGGAAGCCACTAGACAGTTCACGAATTCGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCATGATATAGATGCCTTGGCAAAAATGGTGGATCCTACTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCAATGTCTGAGGTGGTGCAAGCATTAGTCCGGCTGGTGCAAAGAGCAAGTGTGGTTAAAAGACGACCCAGTGACGAATCTGGCATTGGTCATAAGACCCCAGAACATGAGGCCATAGACATGTCATTTTAA 2142 0.4426 MPAHPSSLSPSLAFIFLALLPLLSLANTDPTDVQALEVMYNALNSSTELTGWRIGGGDPCGESWKGVTCEGSAVVSIELSGLGLDGTLGYLLSDLMSLRKLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSFSAMASLNYLNLSNNALSMTVGDVFANLSDLDTLDLSFNNFSGDLPPSFGGLANLSSLFLQKNQLTGSLSVLVGLPLDTLNVANNNFSGWLPREITSIHHFIYDGNSFENTPAPLPPAVTSPPSGSHGHHHSGSGSHNKTQASDNENSDGHTGLSVGAVVGIVLGSVVVAAILLLAFVFCIRKQKGKKKGARNFSGSLPRGVINVTPQMQEQRVKSAAIVTDLKPRPAENVSVERLPTKSGSVRHMKSPITSTSYTIASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKEMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLTGYCAEHGQRLLVYEYIGNGNLHDMLHFAEENSGKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRIRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGIGHKTPEHEAIDMSF 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02247 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 256 - -
Viun6g02247 713 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Viun6g02247 713 CDD STKc_IRAK 410 682 - -
Viun6g02247 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 369 481 - -
Viun6g02247 713 ProSiteProfiles Protein kinase domain profile. 404 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02247 713 ProSiteProfiles Leucine-rich repeat profile. 97 118 IPR001611 GO:0005515
Viun6g02247 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 482 693 - -
Viun6g02247 713 Gene3D Phosphorylase Kinase; domain 1 366 481 - -
Viun6g02247 713 SUPERFAMILY Protein kinase-like (PK-like) 379 679 IPR011009 -
Viun6g02247 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 683 IPR046959 -
Viun6g02247 713 Gene3D Ribonuclease Inhibitor 29 278 IPR032675 -
Viun6g02247 713 SMART LRR_typ_2 141 164 IPR003591 -
Viun6g02247 713 SMART LRR_typ_2 165 188 IPR003591 -
Viun6g02247 713 SMART LRR_typ_2 189 212 IPR003591 -
Viun6g02247 713 SMART LRR_typ_2 95 123 IPR003591 -
Viun6g02247 713 MobiDBLite consensus disorder prediction 262 286 - -
Viun6g02247 713 Gene3D Transferase(Phosphotransferase) domain 1 482 701 - -
Viun6g02247 713 Pfam Protein kinase domain 407 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02247 713 MobiDBLite consensus disorder prediction 249 286 - -
Viun6g02247 713 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Viun6g02247 713 MobiDBLite consensus disorder prediction 693 713 - -
Viun6g02247 713 SUPERFAMILY L domain-like 50 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02247 Viun-Chr6 28139330 28145897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02247 141 713 Strubbelig Receptor Gene Family AT4G22130 69.861 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun6g02247 Pkinase 8.4e-45 CL0016