LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g02244	ATGGCAGCGTATCAGTGGCAGTGCAGGAAAAGAGAGGGAGAGCTTTCATTGGGAAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACAACAACGATGATAACAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCACCACAACCACCGCAACAACAACAACAATGGAAGCTCCTCCTCCTCTTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCTGCTTACGTCAACTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCCTGTGCTTCTGCGGTGACAATGGCCGGAGATGCAGCTGGATCGAGCTCCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAACGGGTTGAGTGTCAGTTCAAAAATCTTACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGGGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCTCAGGCAGAAGACAGAGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGACAACAATTGCTGGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCCACAGGTTTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAACCCTCGGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACGTGGATACTGTTATGGCCAATCCATTTCCCATGGATCTCTCACATCCCATGCTCTAG	984	0.4787	MAAYQWQCRKREGELSLGSNSGTPSIMLDNNHNNNNNDDNNNTGVGYYFMESGHHNHRNNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGDAAGSSSIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRVECQFKNLTVSSSDFGCNEGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML	327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g02244	327	Pfam	Homeobox KN domain	249	288	IPR008422	GO:0003677\|GO:0006355
	Viun6g02244	327	SMART	HOX_1	231	296	IPR001356	GO:0003677
	Viun6g02244	327	Gene3D	-	234	296	-	-
	Viun6g02244	327	SMART	KNOX1_2	72	116	IPR005540	GO:0003677\|GO:0005634
	Viun6g02244	327	SMART	ELK_2	209	230	IPR005539	GO:0003677
	Viun6g02244	327	MobiDBLite	consensus disorder prediction	13	73	-	-
	Viun6g02244	327	SMART	KNOX2_2	123	174	IPR005541	GO:0003677\|GO:0005634
	Viun6g02244	327	Pfam	KNOX2 domain	126	173	IPR005541	GO:0003677\|GO:0005634
	Viun6g02244	327	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	55	298	-	-
	Viun6g02244	327	SUPERFAMILY	Homeodomain-like	231	307	IPR009057	-
	Viun6g02244	327	MobiDBLite	consensus disorder prediction	54	73	-	-
	Viun6g02244	327	MobiDBLite	consensus disorder prediction	14	47	-	-
	Viun6g02244	327	ProSitePatterns	'Homeobox' domain signature.	267	290	IPR017970	GO:0000981\|GO:0006355
	Viun6g02244	327	ProSiteProfiles	'Homeobox' domain profile.	229	292	IPR001356	GO:0003677
	Viun6g02244	327	CDD	homeodomain	241	293	IPR001356	GO:0003677
	Viun6g02244	327	ProSiteProfiles	ELK domain profile.	209	229	IPR005539	GO:0003677
	Viun6g02244	327	Pfam	KNOX1 domain	73	112	IPR005540	GO:0003677\|GO:0005634
	Viun6g02244	327	Pfam	ELK domain	209	230	IPR005539	GO:0003677
	Viun6g02244	327	FunFam	Homeobox protein knotted-1-like 2	234	296	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g02244	Viun-Chr6	28116463	28122230	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g02244	47	327	Homeobox Transcription Factor Family	AT1G62360	75.779	5.63e-133	382

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Viun6g02244		KNOX2	3.6e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g02244	-		-	gmx:100805837	530.791