LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g02243	ATGCCAGGAATGGCAGCGTATCAGTGGCAGTGCAGGAAAAGAGAGGGAGAGCTTTCATTGGGAAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACAACAACGATGATAACAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCACCACAACCACCGCAACAACAACAACAATGGAAGCTCCTCCTCCTCTTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCTGCTTACGTCAACTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCCTGTGCTTCTGCGGTGACAATGGCCGGAGATGCAGCTGGATCGAGCTCCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAACGGGTTGAGTGTCAGTTCAAAAATCTTACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGGGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCTCAGGCAGAAGACAGAGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGACAACAATTGCTGGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCCACAGGTTTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAACCCTCGGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACGTGGATACTGTTATGGCCAATCCATTTCCCATGGATCTCTCACATCCCATGCTCTAG	993	0.4794	MPGMAAYQWQCRKREGELSLGSNSGTPSIMLDNNHNNNNNDDNNNTGVGYYFMESGHHNHRNNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGDAAGSSSIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRVECQFKNLTVSSSDFGCNEGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g02243	330	SMART	KNOX1_2	75	119	IPR005540	GO:0003677\|GO:0005634
	Viun6g02243	330	SMART	ELK_2	212	233	IPR005539	GO:0003677
	Viun6g02243	330	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	58	301	-	-
	Viun6g02243	330	MobiDBLite	consensus disorder prediction	57	76	-	-
	Viun6g02243	330	SUPERFAMILY	Homeodomain-like	234	310	IPR009057	-
	Viun6g02243	330	FunFam	Homeobox protein knotted-1-like 2	237	299	-	-
	Viun6g02243	330	ProSitePatterns	'Homeobox' domain signature.	270	293	IPR017970	GO:0000981\|GO:0006355
	Viun6g02243	330	ProSiteProfiles	ELK domain profile.	212	232	IPR005539	GO:0003677
	Viun6g02243	330	Pfam	ELK domain	212	233	IPR005539	GO:0003677
	Viun6g02243	330	CDD	homeodomain	244	296	IPR001356	GO:0003677
	Viun6g02243	330	MobiDBLite	consensus disorder prediction	18	76	-	-
	Viun6g02243	330	SMART	KNOX2_2	126	177	IPR005541	GO:0003677\|GO:0005634
	Viun6g02243	330	Gene3D	-	237	299	-	-
	Viun6g02243	330	SMART	HOX_1	234	299	IPR001356	GO:0003677
	Viun6g02243	330	MobiDBLite	consensus disorder prediction	18	50	-	-
	Viun6g02243	330	ProSiteProfiles	'Homeobox' domain profile.	232	295	IPR001356	GO:0003677
	Viun6g02243	330	Pfam	Homeobox KN domain	252	291	IPR008422	GO:0003677\|GO:0006355
	Viun6g02243	330	Pfam	KNOX2 domain	129	176	IPR005541	GO:0003677\|GO:0005634
	Viun6g02243	330	Pfam	KNOX1 domain	76	115	IPR005540	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g02243	Viun-Chr6	28116463	28122231	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g02243	50	330	Homeobox Transcription Factor Family	AT1G62360	75.779	7.92e-133	381

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Viun6g02243		KNOX2	3.6e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g02243	-		-	gmx:100805837	530.791