Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02242 ATGTGCAAGCAAACCATGGAGGGTAGTAGTAGTTCTAATGGCACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGCTGGTCATCATCCAATAAATCCTAATCCTAGTAATAATACCAATAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACAACAACGATGATAACAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCACCACAACCACCGCAACAACAACAACAATGGAAGCTCCTCCTCCTCTTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCTGCTTACGTCAACTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCCTGTGCTTCTGCGGTGACAATGGCCGGAGATGCAGCTGGATCGAGCTCCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAACGGGTTGAGTGTCAGTTCAAAAATCTTACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGGGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCTCAGGCAGAAGACAGAGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGACAACAATTGCTGGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCCACAGGTTTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAACCCTCGGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACGTGGATACTGTTATGGCCAATCCATTTCCCATGGATCTCTCACATCCCATGCTCTAG 1137 0.4644 MCKQTMEGSSSSNGTSYLLAFGENSGGLCPMTMMPLVTSHHAGHHPINPNPSNNTNNNANTNCLFIPNCSNSGTPSIMLDNNHNNNNNDDNNNTGVGYYFMESGHHNHRNNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGDAAGSSSIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRVECQFKNLTVSSSDFGCNEGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02242 378 SMART KNOX1_2 123 167 IPR005540 GO:0003677|GO:0005634
Viun6g02242 378 MobiDBLite consensus disorder prediction 100 123 - -
Viun6g02242 378 SMART ELK_2 260 281 IPR005539 GO:0003677
Viun6g02242 378 SMART HOX_1 282 347 IPR001356 GO:0003677
Viun6g02242 378 SUPERFAMILY Homeodomain-like 282 358 IPR009057 -
Viun6g02242 378 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Viun6g02242 378 CDD homeodomain 292 344 IPR001356 GO:0003677
Viun6g02242 378 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Viun6g02242 378 MobiDBLite consensus disorder prediction 105 123 - -
Viun6g02242 378 FunFam Homeobox protein knotted-1-like 2 285 347 - -
Viun6g02242 378 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Viun6g02242 378 Pfam KNOX2 domain 177 224 IPR005541 GO:0003677|GO:0005634
Viun6g02242 378 Pfam KNOX1 domain 124 163 IPR005540 GO:0003677|GO:0005634
Viun6g02242 378 ProSitePatterns 'Homeobox' domain signature. 318 341 IPR017970 GO:0000981|GO:0006355
Viun6g02242 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 99 349 - -
Viun6g02242 378 SMART KNOX2_2 174 225 IPR005541 GO:0003677|GO:0005634
Viun6g02242 378 Gene3D - 285 347 - -
Viun6g02242 378 Pfam ELK domain 260 281 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02242 Viun-Chr6 28116463 28122295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02242 98 378 Homeobox Transcription Factor Family AT1G62360 75.779 1.42e-132 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun6g02242 KNOX2 4.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02242 - - gmx:547796 627.476