Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02235 ATGTCAATGGAGCGTTTGGCTAGGTCAGCTCGAGGGTGGCGTTGGTATTGGCGTTCGTTCTCCTCTTTTCAAACCCTAACTTCTCGCTCCTCACGTCTTTCTACACATCCCAAATTTGCGTCTTCTTGGTTTTCCTCGCCCGATGTTTCCATGTCCAGAGTCTTGTCCGAGGATTATTCATGGCTTCCGGTCTTCTTTGCTGGTGTTTTTGGATCTGGATTGGTGGGAGTGGCTTATGCGGATAATGGTGCTGTGGATATCCAAGAAAGAGCCAAGAAGGAACGCGAGCGAATTGAGGAGTTGATTAGAAGTAGGGGAATTCGATACGGTTCTTATCCTTTATTTTCTGTAGCCGTTAAAGGCCAGAAGGTCAGTGTTAAGTTTCAAATTCCTCATGGTTGTGATATTTCACAACTTATTGCAAGTCTTACTGCACATCTTGGGACGAAGGCTGAAGGCCATGGAGGTGGTTCAGACATGTTGTTACGAGCTTGGAACAGCCCAGTTGCTTGGCAACTTACCCTTTCTAATCCATCAGAACAAAAACATATTCCAGAGAATGGCATTGACATGTCATCGAAAGATATAAATACAGAAGATACAGATCTATGTATACTCATATTTCATTCTCTCGTTGGCTCAGATAAGGCTGAAATTGAATTCATTAAGCAAGGGGAATTGAGTCCTGAAGAGCTTGATGCTTTCATCTCTGTTTTACAATTAGCCGGTAACAAGTTGGGACAAAAAAGCACCCTGGAAAGAAAACCAAGGGAAGAGACTGAAAAGGTGCCATCTGTAGATAAATCTATTTCTGATCTTGAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCGTAGGTATATTGAAAGATGCTGAGATATCATGGGACAACATTGCTGGTTATGAACATCAAAAACGATTAATAGAAGATACAATACTATTGGCATTGCATAGTCCTGAAGTATACGATGATATTGCCCGAGGGACTCGTCATAAGTTTGAGTCAAACAGACCTCGAGCTGTGCTATTTGAAGGTCCACCTGGTACAGGGAAAACATCCTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTACTATATGTTCCACTTGAGGCAATAATGTCCGAGTTCTATGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCGCTGGCAAACAATCTTCCAAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCACGTGACAATGAAATGCATGAAGCTACACGTAGAATATTGTCAGTCTTGTTGAGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTAGTAGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCCGCATTAATCAGTCGGTTTGATAGTATGATCGCTTTTGGCTTACCTGATCATCGGAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCCAAACACGAACTAGAAGAATTTGCAAGAGTTACAGAAGATATGTCTGGAAGAGATATCAGAGATGTTTGTCAGCAAGCAGAACGATCGTGGGCGTCAAAGATTATTCGAGGACAAGTGCCTAAAGAGGGGGAAAAAGCGAAGCTTCCAGCTCTTCAAGAATACATAAAATGCGCCGAGAGTCGACAGGAGGCGCTGCGTAGTGCTGCCGCAAACAGGAAGGTTCCAACCTCTTCCCATCCCAAGATACTATACTAA 1725 0.429 MSMERLARSARGWRWYWRSFSSFQTLTSRSSRLSTHPKFASSWFSSPDVSMSRVLSEDYSWLPVFFAGVFGSGLVGVAYADNGAVDIQERAKKERERIEELIRSRGIRYGSYPLFSVAVKGQKVSVKFQIPHGCDISQLIASLTAHLGTKAEGHGGGSDMLLRAWNSPVAWQLTLSNPSEQKHIPENGIDMSSKDINTEDTDLCILIFHSLVGSDKAEIEFIKQGELSPEELDAFISVLQLAGNKLGQKSTLERKPREETEKVPSVDKSISDLEGMGVRIYGLDEPVGILKDAEISWDNIAGYEHQKRLIEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANNLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMIAFGLPDHRNRQEIASKYAKHLSKHELEEFARVTEDMSGRDIRDVCQQAERSWASKIIRGQVPKEGEKAKLPALQEYIKCAESRQEALRSAAANRKVPTSSHPKILY 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02235 574 CDD RecA-like_protease 328 470 - -
Viun6g02235 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 519 IPR027417 -
Viun6g02235 574 Pfam ATPase family associated with various cellular activities (AAA) 343 471 IPR003959 GO:0005524|GO:0016887
Viun6g02235 574 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 289 518 - -
Viun6g02235 574 SMART AAA_5 339 474 IPR003593 GO:0016887
Viun6g02235 574 ProSitePatterns AAA-protein family signature. 444 463 IPR003960 GO:0005524|GO:0016887
Viun6g02235 574 Coils Coil 84 104 - -
Viun6g02235 574 Gene3D - 473 546 - -
Viun6g02235 574 Gene3D - 293 472 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02235 Viun-Chr6 28092765 28099149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02235 339 539 Calmodulin-binding Proteins AT3G56690 36.058 4.80e-28 117