Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02234 ATGTTGTTACGAGCTTGGAACAGCCCAGTTGCTTGGCAACTTACCCTTTCTAATCCATCAGAACAAAAACATATTCCAGAGAATGGCATTGACATGTCATCGAAAGATATAAATACAGAAGATACAGATCTATGTATACTCATATTTCATTCTCTCGTTGGCTCAGATAAGGCTGAAATTGAATTCATTAAGCAAGGGGAATTGAGTCCTGAAGAGCTTGATGCTTTCATCTCTGTTTTACAATTAGCCGGTAACAAGTTGGGACAAAAAAGCACCCTGGAAAGAAAACCAAGGGAAGAGACTGAAAAGGTGCCATCTGTAGATAAATCTATTTCTGATCTTGAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCGTAGGTATATTGAAAGATGCTGAGATATCATGGGACAACATTGCTGGTTATGAACATCAAAAACGATTAATAGAAGATACAATACTATTGGCATTGCATAGTCCTGAAGTATACGATGATATTGCCCGAGGGACTCGTCATAAGTTTGAGTCAAACAGACCTCGAGCTGTGCTATTTGAAGGTCCACCTGGTACAGGGAAAACATCCTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTACTATATGTTCCACTTGAGGCAATAATGTCCGAGTTCTATGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCGCTGGCAAACAATCTTCCAAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCACGTGACAATGAAATGCATGAAGCTACACGTAGAATATTGTCAGTCTTGTTGAGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTAGTAGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCCGCATTAATCAGTCGGTTTGATAGTATGATCGCTTTTGGCTTACCTGATCATCGGAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCCAAACACGAACTAGAAGAATTTGCAAGAGTTACAGAAGATATGTCTGGAAGAGATATCAGAGATGTTTGTCAGCAAGCAGAACGATCGTGGGCGTCAAAGATTATTCGAGGACAAGTGCCTAAAGAGGGGGAAAAAGCGAAGCTTCCAGCTCTTCAAGAATACATAAAATGCGCCGAGAGTCGACAGGAGGCGCTGCGTAGTGCTGCCGCAAACAGGAAGGTTCCAACCTCTTCCCATCCCAAGATACTATACTAA 1248 0.4151 MLLRAWNSPVAWQLTLSNPSEQKHIPENGIDMSSKDINTEDTDLCILIFHSLVGSDKAEIEFIKQGELSPEELDAFISVLQLAGNKLGQKSTLERKPREETEKVPSVDKSISDLEGMGVRIYGLDEPVGILKDAEISWDNIAGYEHQKRLIEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANNLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMIAFGLPDHRNRQEIASKYAKHLSKHELEEFARVTEDMSGRDIRDVCQQAERSWASKIIRGQVPKEGEKAKLPALQEYIKCAESRQEALRSAAANRKVPTSSHPKILY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02234 415 CDD RecA-like_protease 169 311 - -
Viun6g02234 415 Gene3D - 314 387 - -
Viun6g02234 415 SMART AAA_5 180 315 IPR003593 GO:0016887
Viun6g02234 415 Gene3D - 134 313 IPR027417 -
Viun6g02234 415 Pfam ATPase family associated with various cellular activities (AAA) 184 312 IPR003959 GO:0005524|GO:0016887
Viun6g02234 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 360 IPR027417 -
Viun6g02234 415 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 130 359 - -
Viun6g02234 415 ProSitePatterns AAA-protein family signature. 285 304 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02234 Viun-Chr6 28092764 28099149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02234 180 380 Calmodulin-binding Proteins AT3G56690 36.058 4.94e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02234 - - var:108341616 787.334