Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02229 ATGAGTCAACTCGGCGTGGTGTTGCAGGAATCGCTACAGAGGGAGCCCAGAACCATTCTGGGGTTGTTGAGGGATCAGATGGACGGTGTAGAGGGTGGGGCACGCAGGAGGAAGACCTTCAAGGAACGCTTCGGATTCATAGGCATCGGCTGTTGCGGGGCCACATGGGGGTTCCGTTCGGACGCGTTAAGTTTCTCCCAAGGAGAACAACAGCAACAGCACCAGCAACAAGCGAACCAGCAGGAAACGGATCCGGGTCAAGGGTCGGGTTTGGACTGTGTGGACCACGGTGCGGCGGGTTCGGGTATGAACTTGGCGGCGGCGCTTGCGGCTGAGCGGCAAATCAGGGGGCCGCAGGAGGAGGTGGCGAGGGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGACTGCTGGAGGAGAGCGAAGCAGGGGAGTCCGCGGCGGTGGAGAAGGAAAAGGAGGAGGAGAAGGGTGGTGTTGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCCTTCATCCCATGTGGTCACACTTTTTGCAGAGTGTGTTCCAGGGAACTGTGGCTGAATCGAGGGTCCTGTCCCCTCTGCAATCGCTCCATCCTCGAGATCCTCGACATTTTCTAG 648 0.5988 MSQLGVVLQESLQREPRTILGLLRDQMDGVEGGARRRKTFKERFGFIGIGCCGATWGFRSDALSFSQGEQQQQHQQQANQQETDPGQGSGLDCVDHGAAGSGMNLAAALAAERQIRGPQEEVARAPGTPWRVSLMRLLEESEAGESAAVEKEKEEEKGGVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02229 215 SMART ring_2 167 204 IPR001841 -
Viun6g02229 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 215 IPR013083 -
Viun6g02229 215 Pfam Zinc finger, C3HC4 type (RING finger) 164 209 - -
Viun6g02229 215 PANTHER OS01G0917900 PROTEIN 7 215 - -
Viun6g02229 215 MobiDBLite consensus disorder prediction 65 94 - -
Viun6g02229 215 CDD RING-HC 167 204 - -
Viun6g02229 215 MobiDBLite consensus disorder prediction 65 87 - -
Viun6g02229 215 ProSiteProfiles Zinc finger RING-type profile. 167 205 IPR001841 -
Viun6g02229 215 SUPERFAMILY RING/U-box 166 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02229 Viun-Chr6 28034230 28035383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02229 19 215 C3H Transcription Factor Family AT4G22250 56.931 7.60e-64 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02229 - - pvu:PHAVU_006G145000g 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02229 6 28034230 28035383 Viun6g02229 6 28034230 28035383 ECH