Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02222 ATGGCGGGGTCATGTTTCCATGGACTAAGGCTAAGGATGTCTAAGAGTAAACCTTTACCAGACCCTTCATCCTCCTCCAAGTTAAGGTTGGAGAGTGACACGGAGAACAATGAAAGGAAGAGATTTGATAGCATGGAATCGTGGTCCATGATATTGGACTCAATGGATACATGGGAGGCTTCAAAGGAGGAGGGGGAGCAAGAGGAATGGACTGCCGACCTATCACAGCTTTTTATCGGCAACAGGTTTGCTTGTGGAGCTCACAGCCGAATTTACCGTGGAGTCTACAAGCAGAGAGCAGTTGCTGTGAAAATGGTGAAGATGCCATCCCAGGATGAGGACAAAAAGGAATTACTAGAGGAGCAATTTAACTCTGAAGTGGCTTTGCTTTCACGTCTCTTCCATTTTAACATTGTGGAGTTTATTGCAGCATGTAAAAAACCGCCGGTGTACTGTATCATAACAGAATACATGTCACAAGGGAATCTAAGGATGTATCTGAACAAGAAAGAGCCATACTCACTCTCACTGGAAATAATAATAAGGTTGGCTCTGGATATATCAAGGGGCATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGACTTGAAGTCAAGTAATTTGCTCCTCGACGATGACTTGAGGGCTAAGGTGGCGGATTTTGGCACATCTTGTCTTGAAACAAGATGCCGGAAAAGCAAAGGGAACTCGGGAACATATCGTTGGATGGCACCAGAGATGGTTAAGGAAAAACCTTATACTAGAAAAGTTGATGTCTACAGTTTTGGTATTGTGCTTTGGGAGCTCACTACTTCTCTACTTCCTTTCCAAGGAATGACCCCAGTGCAAGCTGCTTTTGCTGTGGCTGAGAAGAATGAAAGGCCTCCTCTGCCAGCAAGTTGTGAACCAGCACTGGCACATCTGATAAAGCGTTGTTGGTCAGGAAACCCGTCGAAACGACCAGATTTCAGCGACATTGTTTGTACATTGGAGAAGTACGATGAGTGTTTGAAGGAGGGCGTACCAATGAGCCATCATTCAGGGCTAGTAAGCAGAAATGTTATTGTCGAACGCCTAAAAGGCTGTGTATCAATGACCTCCTCCATACCCGTCTATGCTTGA 1125 0.4507 MAGSCFHGLRLRMSKSKPLPDPSSSSKLRLESDTENNERKRFDSMESWSMILDSMDTWEASKEEGEQEEWTADLSQLFIGNRFACGAHSRIYRGVYKQRAVAVKMVKMPSQDEDKKELLEEQFNSEVALLSRLFHFNIVEFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSLEIIIRLALDISRGMEYLHSQGVIHRDLKSSNLLLDDDLRAKVADFGTSCLETRCRKSKGNSGTYRWMAPEMVKEKPYTRKVDVYSFGIVLWELTTSLLPFQGMTPVQAAFAVAEKNERPPLPASCEPALAHLIKRCWSGNPSKRPDFSDIVCTLEKYDECLKEGVPMSHHSGLVSRNVIVERLKGCVSMTSSIPVYA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02222 374 SUPERFAMILY Protein kinase-like (PK-like) 55 331 IPR011009 -
Viun6g02222 374 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 70 334 - -
Viun6g02222 374 Pfam Protein tyrosine and serine/threonine kinase 80 330 IPR001245 GO:0004672|GO:0006468
Viun6g02222 374 SMART serkin_6 77 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02222 374 Gene3D Transferase(Phosphotransferase) domain 1 160 349 - -
Viun6g02222 374 CDD STKc_MAP3K-like 86 328 - -
Viun6g02222 374 FunFam Serine/threonine-protein kinase isoform 1 67 159 - -
Viun6g02222 374 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Viun6g02222 374 PRINTS Tyrosine kinase catalytic domain signature 193 211 IPR001245 GO:0004672|GO:0006468
Viun6g02222 374 PRINTS Tyrosine kinase catalytic domain signature 239 249 IPR001245 GO:0004672|GO:0006468
Viun6g02222 374 PRINTS Tyrosine kinase catalytic domain signature 155 168 IPR001245 GO:0004672|GO:0006468
Viun6g02222 374 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672|GO:0006468
Viun6g02222 374 ProSiteProfiles Protein kinase domain profile. 77 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02222 374 Gene3D Phosphorylase Kinase; domain 1 66 159 - -
Viun6g02222 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Viun6g02222 374 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02222 Viun-Chr6 27946876 27951463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02222 1 365 MAP Kinase Kinase Kinase AT1G62400 75.597 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun6g02222 PK_Tyr_Ser-Thr 3.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02222 - - gmx:100810171 659.448