Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02209 ATGTCTGGCGGAGAAGAAGACTCCGCCAATCCATTGCGGTGGCCGTTTCAGTTCTTCGTCCGTACGGTGTCAACGGGGCGTAGCATGGTGATGACTGGTTACCCGGAAGAGACCGTGAAATCTGTCCTTGTGAAGATCGCGTGGTTGACGGGAATGCCGCTGAGAGAACTGAGAGTGATATACAAGGGAAAACAACTTCAATTGGAGAAGACTCTGGTGGAGTCCGGCATCGAGAACGATTCCAATCTCAACGTCGTTGGTCACTTGCGCAGCGGATTGTACCCGGCGGCGTCACGCCCTATCGACTACGTGCTATCCCTGCTAGCGCATGTGTTTACCAGCAACAACGGGAGCGCGTGTGCAGCCTTGAAGACCGTGAAGGCTCTCACCACGCGCCATTTCAGTCTCCCTGGTTTCGTGGAGCTTTACGCAGCCTCTAATGCCCCCACGATGCTGGCCTCGATCTACCACTCGTCATCTGGCGCTGATACTAGGAAAATAGCCGCGTCTTGCATAATGAATTTCATGAGTTGCGTGAGCGCGAAGAATTGGCAGGGGGGTTCCGTTGGTGCGGTGATGGAGTTTTGCAAGCAGCTTAGAAAGTTTGGGCGTGGAGACCATGATTATTTGTATCTTTCGTGTAGAAACACTTTGGGGCATTTGTTGAATACAATTGGGGTTTCCTATGGTTCTGGGAGTGTGAAAAAGAGGGTTTCCCTTCGCGATGTTTTTTCCTTTGTTCCCGAGCTTGTGGATTCGTTGTTAGTGAGTTTGGATTATAGTAAACGGGGTGGTAACACCATCCTCTCCATCACGGGGCCTTCGCCGGCAGAAGTTTCTGATTTGATAATATTCTTGACCCCTTTGAGGAATGCAATTATTCTGCAGAAGCAATTGTTGGGAGGTTTTGCGAGTGGGGATGATGAAAAATGTAGTGTGGAGAAGGATGGTGATCAGTTGCTTGAGGAAGAAATTGATTATCTTCGGCTTGTGTTTGTTAGGTTGTTGAGCAAAATGGATGAGTGTTTTCGCTTCATGGCGGAATACTTGGCGGGCAAGGAATCTGGTGGGAGGGGTTTTGTTCTCAATCACTCATGGTGTGAGTATCTTCGTATCTTGAAGGATTTGTATGATACTTCTAAAGTCTTTGATGGTGCTGAGGAAATGTTTTGGACAGTTTTGAGGTTTCATAAGAATATGCTGTCTGCGCTTGTTGTTGGGTTTGTGAAGAGAGGTGGTGATCATCGGTGGGTTCTTGATGACAAGAGTGTGACCAATTTTGAGTGTAGAAGGCACTTGGCGATGATTTTGTTCCCTGCTGTCGACGAAGGCTTTGACATGTTTCATGAGATGCTTATTGACAGGTCTCAGGTACTGGCGGAGTCCTTTGAGTACATAGGACGAGCGAATCCTGAGTCTCTGCGTTCTGGTCTGTTTATGGAATTCAAAAACGAGAAAGCTACAGGACCTGGTGTCTTACGGGAGTGGTTTGTTCTGGTGTGTCGAGAAATATTTGATTCACGACATGCTCTTTTTGTGTCTTGCCCGAATGACTGCAGGAGATTTTATCCGAATCCTGCATCTAAGGTACATCCTCGGCACCTTGAGTACTTTAGGTTCGCTGGTCGGGTTATTGCATTGGCTTTGTTGGAAAGGGTGCAAGTTGGTATTGTTTTTGATCGTGTATTTTTCATACAATTGGCTGGAATTCGTGTTACCTTAGAAGATATACGGGATGCAGATCCTTGCTTGTATAGAAGCTGCAAGCAAATATTGGAGATGGATGCTGAGTTCATTGATTCGGATGCATTAGGACTGACATTTGTTAGAGAGTTGGAGGAATTAGGATGCAGGGAAGTTGTCGAGCTTTGTCCTGGTGGGAAAAACATTATATTGAATAGTCAGAACAGGGAGCACTATGTTGATCTTCTCATACAGCATTGTTTTGTAACATCCATATCTGAGCAGGTAGCAAACTTTGCTCAGGGTTTAGCTGATATTCTTTCCAGCTCAAAGCTTCAACAGTTCTTCCAATGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACAATCTCTATTGAAGATTGGAAGGCACATACCGTGTACAAGGGCTATAAAGAGTCTGATTGTCAGATATCCTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCAGAACAAAGGAGGGTTCTGCTTTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGATTCCGTGGTTTGTCTTCCCCTCTATCCATTTGCAGGACTGCAGAACCTGGCAATCGCCTGCCCTCATCTCACACATGTTTTCACCGTCTGTTTTTACCCAAGTATTCGTCTAGTGCTGTTATGCAAGATCACTTTGGAGTCATCACTCAAGAACACATTGCTAGTAGTTTTGGTATTAGTTAA 2430 0.4576 MSGGEEDSANPLRWPFQFFVRTVSTGRSMVMTGYPEETVKSVLVKIAWLTGMPLRELRVIYKGKQLQLEKTLVESGIENDSNLNVVGHLRSGLYPAASRPIDYVLSLLAHVFTSNNGSACAALKTVKALTTRHFSLPGFVELYAASNAPTMLASIYHSSSGADTRKIAASCIMNFMSCVSAKNWQGGSVGAVMEFCKQLRKFGRGDHDYLYLSCRNTLGHLLNTIGVSYGSGSVKKRVSLRDVFSFVPELVDSLLVSLDYSKRGGNTILSITGPSPAEVSDLIIFLTPLRNAIILQKQLLGGFASGDDEKCSVEKDGDQLLEEEIDYLRLVFVRLLSKMDECFRFMAEYLAGKESGGRGFVLNHSWCEYLRILKDLYDTSKVFDGAEEMFWTVLRFHKNMLSALVVGFVKRGGDHRWVLDDKSVTNFECRRHLAMILFPAVDEGFDMFHEMLIDRSQVLAESFEYIGRANPESLRSGLFMEFKNEKATGPGVLREWFVLVCREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFIQLAGIRVTLEDIRDADPCLYRSCKQILEMDAEFIDSDALGLTFVRELEELGCREVVELCPGGKNIILNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLHGSEDTISIEDWKAHTVYKGYKESDCQISWFWEIVGRMSAEQRRVLLFFWTSVKYLPVEGFRGLSSPLSICRTAEPGNRLPSSHTCFHRLFLPKYSSSAVMQDHFGVITQEHIASSFGIS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02209 809 Pfam Ubiquitin family 19 90 IPR000626 GO:0005515
Viun6g02209 809 Gene3D Hect, E3 ligase catalytic domain 570 652 - -
Viun6g02209 809 SMART hect_3 468 809 IPR000569 GO:0004842
Viun6g02209 809 SMART ubq_7 16 88 IPR000626 GO:0005515
Viun6g02209 809 FunFam E3 ubiquitin-protein ligase UPL5 693 808 - -
Viun6g02209 809 CDD HECTc 449 790 IPR000569 GO:0004842
Viun6g02209 809 ProSiteProfiles Ubiquitin domain profile. 16 92 IPR000626 GO:0005515
Viun6g02209 809 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 570 652 - -
Viun6g02209 809 Gene3D - 15 94 - -
Viun6g02209 809 SUPERFAMILY Hect, E3 ligase catalytic domain 445 792 IPR035983 GO:0004842
Viun6g02209 809 Pfam HECT-domain (ubiquitin-transferase) 499 801 IPR000569 GO:0004842
Viun6g02209 809 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 17 807 - -
Viun6g02209 809 SUPERFAMILY Ubiquitin-like 10 92 IPR029071 -
Viun6g02209 809 Gene3D Hect, E3 ligase catalytic domain 692 807 - -
Viun6g02209 809 Gene3D Hect, E3 ligase catalytic domains 452 684 - -
Viun6g02209 809 ProSiteProfiles HECT domain profile. 470 809 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02209 Viun-Chr6 27848514 27853742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02209 17 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.065 4.47e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02209 - - var:108341618 956.051