Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02201 ATGGTTTCGCTGGAAGAATCACGGTCTAATTCGAGCCGTTTCCCCTTGGCCAAGAGTTACCAGTACCACTCCTCAGTTTCGTCCAAAACGCAGCGTCATATAGGAAGGTCCATGCGCACGATACGTTCCAATTTCTTCCAAGACGACAGCAGTAGCTGCTCCTTCACCGAAAAATCCACCTGTCTATCGGAGAACCTCACCGACTCCGTCGTCGACCTTCGCCTCGGCGAGCTCGCGTCGCGGAACAACAAATCCTTGAAATCCTCACCCGGAGAGGAGGACTTCCTCGACCTCTCCCAGGCCTTCAGTGATTTCTCCGCATGCAGCAGCGACATCTCCGGCGAGCTGCAGCGGCTGGCGACACTCCCATCACCGGAATGCGTGCAGAAGAGCAATATATCTGGAGAAGTGGAGCCGGAGACGGAACCGGAGCCCTGCACGGGTTTCCTGCAGAGGGAGAGCTTCTCCACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAGATTTGCATCGACGGCCTCCAGTCCCAGTCGGTGGCAGTAAAGCGCTCCGCGGCGGCGAAACTCCGGCTGCTAGCGAAGAATCGCGCCGACAACCGGGTTTTGATCGCGGAGTCCGGCGCGGTGCCCGTTCTTGTTCCGCTTCTCCGGTGTAGCGATCCTTGGACGCAGGAACATGCGGTAACCGCGCTGTTAAATCTATCTCTCCACGAGGACAATAAAATGCTGATAACCAATGCTGGAGCAGTGAAGTCGCTGATTTATGTGCTGAAAACGGGAACGGAAACTTCGAAGCAGAACGCGGCATGCGCGCTTCTAAGTCTGGCGCTGGTGGAAGAGAACAAAAGCTCCATCGGGGCTTCTGGAGCGATACCACCCTTAGTTTCGCTTCTTCTGAACGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACGCTTTATAAGCTGTGTTCTGTGAGGCAGAACAAGGAGAGGGCGGTGAGCGCCGGTGCGGTGAAGCCGCTGGTGGAGCTGGTGGCAGAGCAGGGGAACGGCATGGCGGAGAAGGCCATGGTGGTGCTCAACAGCCTGGCCGGGATTCAGGAAGGGAAGGATGCAATTGTGGAAGAAGGTGGGATCGCTGCTCTTGTGGAAGCCATTGAGGATGGGTCTGTGAAGGGGAAGGAGTTCGCGGTTCTGACCCTTCTTCAGCTCTGTGTTGACAGTATCAGAAACAGAGGGTTTCTTGTCAGAGAGGGTGGGATTCCTCCCCTCGTTGCCCTTTCTCAAACTGGGAGTGTTCGAGCTAAGCACAAGGCCGAAACGCTGCTTCGATATTTGAGGGAATCAAGACAAGAGGCGTCTACATCGAGTTCTTAG 1374 0.5604 MVSLEESRSNSSRFPLAKSYQYHSSVSSKTQRHIGRSMRTIRSNFFQDDSSSCSFTEKSTCLSENLTDSVVDLRLGELASRNNKSLKSSPGEEDFLDLSQAFSDFSACSSDISGELQRLATLPSPECVQKSNISGEVEPETEPEPCTGFLQRESFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGNGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSIRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02201 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Viun6g02201 457 Gene3D - 312 457 IPR011989 -
Viun6g02201 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Viun6g02201 457 Gene3D - 156 311 IPR011989 -
Viun6g02201 457 SUPERFAMILY ARM repeat 169 446 IPR016024 -
Viun6g02201 457 FunFam U-box domain-containing protein 4 158 310 - -
Viun6g02201 457 PANTHER U BOX DOMAIN-CONTAINING 130 446 - -
Viun6g02201 457 FunFam U-box domain-containing protein 4 311 452 - -
Viun6g02201 457 SMART arm_5 283 323 IPR000225 GO:0005515
Viun6g02201 457 SMART arm_5 324 364 IPR000225 GO:0005515
Viun6g02201 457 SMART arm_5 406 447 IPR000225 GO:0005515
Viun6g02201 457 SMART arm_5 242 282 IPR000225 GO:0005515
Viun6g02201 457 SMART arm_5 365 405 IPR000225 GO:0005515
Viun6g02201 457 SMART arm_5 201 241 IPR000225 GO:0005515
Viun6g02201 457 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Viun6g02201 457 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Viun6g02201 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02201 Viun-Chr6 27771732 27774667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02201 109 450 U-box Gene Family AT2G23140 44.729 9.67e-84 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02201 - - gmx:100806768 773.467