Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02188 ATGGGTCGTTCTCGTGGGAATTTTCATCACGCGGATGAGGACCCCAACCAGAGATCAAGGAGAAAAAAGAATGCCGCCAGTGGAGAAAACTCTGAATCTGGAGCTGCAGGTCAAGGAGCAGGAGAAGGGAAAAAGGCTCTGTACCATTGCAATTATTGTAATAAAGATATAACTGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCCGTTGGAGCTGAGGTGACACCTCACAAAAGCAACCATCCTTACAGGGTTATGGACAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAACGCAGATGATGAAATTTTGCTGCTAGAGGGAATCGAAATGTATGGCTTGGGAAACTGGACAGAAGTCGCTGAGCATGTTGGAACCAAAAACAAAGAGTCATGCATCGAACACTATAAGAACATATACTTGAGCTCCCCATTCTTTCCTGTTCCGGACATGTCTCACGTGGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCAAAGGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTTTAAAGGCAGAATCTCCCTTCTCTCCATCTAGAGCCAAGGTTGAAGATTCACATAAAGCTGGCACTGCTAATCGTTTGTCTTCCAATTTGAATTCAGAGTCAGATTCTGGTCCCTCGGGTAACACACACTCTGCCGCTGGTGCTAACCAAAAGGCATCTAATGTGGCCAGGGGAAAAGGTGGTCCTGGAGTCATTAAAATGGAAGATTCTCAGATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCCTCAGGAAATGAAGGCCCTTCTTTGGTAGAATTGAGTGGTTACAATGCTAAAAGACAAGAATTCGATACTGAGTATGATAATGATGCTGAACAACTACTCGCTGAAATGGAATTTAAGGATACTGACTCTGAGGAAGAGCGAGAGTTGAAATTACGTGTATTGCGTTTATATTCAAAGAGGCTTGATGAAAGAAAACGGAGGAAGGATTTCATACTCGAAAGAAATTTGTTATACCCAAATCCATTGGAGAAGGATTTAACACCCGAGGAGAAGGCAATGTGTCGAAAATATGATATATTCATGCGCTTTCATTCTAAGGAAGATCACGATGAGTTGCTTAGAACAATGATCTTTGAGCATAGAAGTTGGAAAAAGATTCAAGAGCTTAAGGAAGCCCGGTTAGCCGGTTGCCGCAATTCAGCTGATGCTGAAAAATATATCTCTTTGAAGAGAAAGAGGGAAGCAGAAGAAAATGCTCGAAGGACAAGGACAAAAGAAAGTGCTCAGGTTGGGCCGAGCAATCAGGGTATTCCAAATGCATTGACTTCTCCAGATTCAGCTAGTAAGGATCTGAGTGCAAGACCTGCAGGGCCAGCTACTTCTAGTTCTGTCAATGAGATGGATGCCATAGGATACAGTGGAGCAGATTTGCTTTCTGAAGCGGAGAAACGTTTGTGCTGTGAGCTAAGATTGTCTCCAGCCACGTATCTAAAAATGCAAGAGCAACTGTCACTGCAAATACTTGCTGGCACTGTGTCTGCAAAATCTGATGCTCATCAATTGTTCAAGTTGGATGCCATAAAAGTTGACAGGGTGTATGATATGCTCATTAAAAAGGGGATCGGTTTACCCTGA 1683 0.4314 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYKNIYLSSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDLSLKAESPFSPSRAKVEDSHKAGTANRLSSNLNSESDSGPSGNTHSAAGANQKASNVARGKGGPGVIKMEDSQIDRDFGGKKPTSSGNEGPSLVELSGYNAKRQEFDTEYDNDAEQLLAEMEFKDTDSEEERELKLRVLRLYSKRLDERKRRKDFILERNLLYPNPLEKDLTPEEKAMCRKYDIFMRFHSKEDHDELLRTMIFEHRSWKKIQELKEARLAGCRNSADAEKYISLKRKREAEENARRTRTKESAQVGPSNQGIPNALTSPDSASKDLSARPAGPATSSSVNEMDAIGYSGADLLSEAEKRLCCELRLSPATYLKMQEQLSLQILAGTVSAKSDAHQLFKLDAIKVDRVYDMLIKKGIGLP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02188 560 MobiDBLite consensus disorder prediction 193 285 - -
Viun6g02188 560 CDD SANT 108 150 IPR001005 -
Viun6g02188 560 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Viun6g02188 560 SUPERFAMILY Homeodomain-like 470 557 IPR009057 -
Viun6g02188 560 Gene3D - 475 558 IPR036388 -
Viun6g02188 560 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Viun6g02188 560 SMART zz_5 44 89 IPR000433 GO:0008270
Viun6g02188 560 SUPERFAMILY RING/U-box 48 110 - -
Viun6g02188 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Viun6g02188 560 CDD ZZ_ADA2 48 96 IPR041983 -
Viun6g02188 560 SMART sant 104 153 IPR001005 -
Viun6g02188 560 FunFam Transcriptional adapter 2 101 153 - -
Viun6g02188 560 MobiDBLite consensus disorder prediction 1 42 - -
Viun6g02188 560 FunFam Transcriptional adapter 2 475 558 - -
Viun6g02188 560 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Viun6g02188 560 FunFam Transcriptional adapter 41 96 - -
Viun6g02188 560 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Viun6g02188 560 MobiDBLite consensus disorder prediction 429 481 - -
Viun6g02188 560 MobiDBLite consensus disorder prediction 1 27 - -
Viun6g02188 560 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Viun6g02188 560 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Viun6g02188 560 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Viun6g02188 560 PIRSF Txn_adaptor_ADA2 35 559 IPR016827 GO:0003713|GO:0006357|GO:0035065
Viun6g02188 560 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 555 - -
Viun6g02188 560 MobiDBLite consensus disorder prediction 214 244 - -
Viun6g02188 560 ProSiteProfiles SWIRM domain profile. 474 560 IPR007526 GO:0005515
Viun6g02188 560 MobiDBLite consensus disorder prediction 441 481 - -
Viun6g02188 560 Gene3D - 41 96 IPR043145 -
Viun6g02188 560 Gene3D - 102 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02188 Viun-Chr6 27684781 27689656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02188 1 558 EF-hand Containing Proteins AT3G07740 45.983 1.49e-161 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g02188 Myb_DNA-binding 6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02188 K11314 - gmx:100811887 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02188 6 27684781 27689656 Viun6g02188 6 27684781 27689656 ECH