Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02174 ATGTTTTCTTGTCAATCATATAAGATGTGCTATCTGGTTCCGGTGGTTCCACTACAAAGACCTGATGAAATGCATACTCCAAGCCCTTCCTGGATGCAGACTACGTCAGGGTACGAGGATATGTACAGTGAACTTGGAATTCCAACGATGATTACTTGGAGTTATGATGGGAAAGAAGTGGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGTCCTTACAGAGATCAGGGAAGGATTTCACAATAATGAAAGTGTTGCCATCCGGTGTATACCAATTTAGATTTATTGTGGATGGCCAGTGGAGGTATGCACCTGACTTGCCTTGGGCTCAAGATGATGCGGGTAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAGGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCGTATTTGCAAATGACGCTTCTTAATATTCCGTCAACAAATATGGAAATCCAACCTCTTACAGCCAGACCTCAGCATGTAGTGCTGAATCATCTTTATATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTCGCACTTGGCACAACTCATCGGTTTCGAGCCAAATATGTGACTGTGGTGCTGTACAAGTCTTTGCAGAGAAAATCTCCCACAGTGCACTATTTGACGACTGGTCCTACCTCTTTCTTGAACTAG 756 0.4299 MFSCQSYKMCYLVPVVPLQRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWKTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEIQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFRAKYVTVVLYKSLQRKSPTVHYLTTGPTSFLN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02174 251 Gene3D Immunoglobulins 42 129 IPR013783 -
Viun6g02174 251 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 12 234 IPR043554 -
Viun6g02174 251 SUPERFAMILY E set domains 47 132 IPR014756 -
Viun6g02174 251 SMART AMPKBI_2 142 232 IPR006828 GO:0005515
Viun6g02174 251 Pfam Glycogen recognition site of AMP-activated protein kinase 47 126 IPR032640 -
Viun6g02174 251 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 160 230 IPR006828 GO:0005515
Viun6g02174 251 Gene3D - 135 232 - -
Viun6g02174 251 SUPERFAMILY AMPKBI-like 129 231 IPR037256 -
Viun6g02174 251 CDD E_set_AMPKbeta_like_N 48 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02174 Viun-Chr6 27603475 27607029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02174 46 127 Protein tyrosine phosphatase (PTP) family AT3G01510 31.818 1.16e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02174 K07199 - gmx:100777497 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g06033 3 64204568 64207818 Viun6g02174 6 27603475 27607029 PCT