Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02173 ATGGGCAATGTGAATGGGAGAGACGATGTCAACGGTTCTCCCTCCGAGACCGACGGAGAAGAAGAAGAAGACGACGACGAAGCTGCTGCTTCTGCACCTACTCACGCTGTCGCCGATTGCATGTCCGCCAACCCTGGCTATCGTGCGCCTCCTTCCGATATGATGGGTCATTCTCCCCCTGCTAGCCCTAGAACCACTCAATCTCCCTTCATGTTCGCCCCACAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAAATGCATACTCCAAGCCCTTCCTGGATGCAGACTACGTCAGGGTACGAGGATATGTACAGTGAACTTGGAATTCCAACGATGATTACTTGGAGTTATGATGGGAAAGAAGTGGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGTCCTTACAGAGATCAGGGAAGGATTTCACAATAATGAAAGTGTTGCCATCCGGTGTATACCAATTTAGATTTATTGTGGATGGCCAGTGGAGGTATGCACCTGACTTGCCTTGGGCTCAAGATGATGCGGGTAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAGGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCGTATTTGCAAATGACGCTTCTTAATATTCCGTCAACAAATATGGAAATCCAACCTCTTACAGCCAGACCTCAGCATGTAGTGCTGAATCATCTTTATATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTCGCACTTGGCACAACTCATCGGTTTCGAGCCAAATATGTGACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 894 0.4664 MGNVNGRDDVNGSPSETDGEEEEDDDEAAASAPTHAVADCMSANPGYRAPPSDMMGHSPPASPRTTQSPFMFAPQVPVVPLQRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWKTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEIQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFRAKYVTVVLYKSLQR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02173 297 MobiDBLite consensus disorder prediction 1 69 - -
Viun6g02173 297 Gene3D - 198 295 - -
Viun6g02173 297 SMART AMPKBI_2 205 295 IPR006828 GO:0005515
Viun6g02173 297 Gene3D Immunoglobulins 105 192 IPR013783 -
Viun6g02173 297 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 297 IPR043554 -
Viun6g02173 297 Pfam Glycogen recognition site of AMP-activated protein kinase 110 189 IPR032640 -
Viun6g02173 297 CDD E_set_AMPKbeta_like_N 111 187 - -
Viun6g02173 297 SUPERFAMILY AMPKBI-like 192 294 IPR037256 -
Viun6g02173 297 SUPERFAMILY E set domains 110 195 IPR014756 -
Viun6g02173 297 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 223 293 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02173 Viun-Chr6 27603042 27606083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02173 109 190 Protein tyrosine phosphatase (PTP) family AT3G01510 31.818 3.79e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02173 K07199 - gmx:100777497 552.362