Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02168 ATGGCCGAGTCCGATAACGATTCCGGAGGTCATGCCGGAAACACGAGTGGAGGGAATGAATTCTCGGGGTGCAGAGAGCAAGACAGGTTCCTTCCAATAGCAAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGAGGCGAAGGAAACCGTGCAGGAGTGTGTGTCGGAGTTCATCAGCTTCATAACAGGTGAAGCATCTGATAAGTGCCAGAAGGAGAAGAGAAAAACTATCAACGGTGATGACCTACTGTGGGCCATGACCACACTGGGGTTTGAGGAGTATGTGGAGCCTCTCAAGGTTTACCTGCACAAGTATCGGGAGATGGAGGGGGAGAAAACTGCTATGATCGGAAGGCCACAGGGCGGTGGTGGTGGTGGTGGTGGTGGAGGTAGTGGCGGTGGTGATCAGAGGGATGAGGCTTATGGCCATGGCCATGCTCATGGAGGTATGGTGCCAAACTCTATGATGGTCATGATGGGGCATCAGGGACACGTGTATGGATCTGGGAGTGCTGGATCAGCATCTTCTGCAAGAACTAGATAG 567 0.5326 MAESDNDSGGHAGNTSGGNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLHKYREMEGEKTAMIGRPQGGGGGGGGGGSGGGDQRDEAYGHGHAHGGMVPNSMMVMMGHQGHVYGSGSAGSASSARTR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02168 188 SUPERFAMILY Histone-fold 27 131 IPR009072 GO:0046982
Viun6g02168 188 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Viun6g02168 188 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Viun6g02168 188 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Viun6g02168 188 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Viun6g02168 188 Gene3D Histone, subunit A 19 132 IPR009072 GO:0046982
Viun6g02168 188 MobiDBLite consensus disorder prediction 8 22 - -
Viun6g02168 188 FunFam Nuclear transcription factor Y subunit B-3 19 136 - -
Viun6g02168 188 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun6g02168 188 MobiDBLite consensus disorder prediction 123 155 - -
Viun6g02168 188 MobiDBLite consensus disorder prediction 1 24 - -
Viun6g02168 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02168 Viun-Chr6 27587773 27588898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02168 1 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.921 2.71e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun6g02168 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02168 K08065 - gmx:100305641 268.085