Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02145 ATGATTCTGAAGTTGGTACTGCATTTCATCGTTTTGGTAATATGGAGCGTAGGTGTAGAGGTATCAGCACAAGATCACCCATCCGTAGCAAAGCCTGGTTGCGATTCGCGATGTGGAGATCTTCAAATTCCCTTTCCGTTTGGAATGAAGAGTTCAGAATGCTACGCAGAGAAGTGGTTTGAAATAGAATGCAGAAACAGTGCCACATATCATCAAACACCTTACCTCAAGTCAATAGGAGTGGAAGTGACATCCATTGATGTGGGAAGAGGCACGGTTACTATCAACCATCCTATTTACCGTAGTAACTGCGGAACCAAACATTCTCCGCCGGTCAACTACTCGCTCAAAGGAAGCCCTTTCGTGTATTCCCAGAAATACAACAAATTTGTTGCCACAGGTTGCAATATTATTGGTTATTTGGAGGTAAACGGATCAGAAGGCAGTGGTTGCGTCTCCATCTGCGACCAGGACTACACGGTGGATGATATCGGGAAGACGGACCTTTCAAAGGCCGGTTGTAATGGGAAGTGGTGCTGTGCGAATTCCCTGCCACCGTTTCTTACGGAATACAGGGGTGGAATAAAAGGTTTGAAGGAGAATGAAAGGGGTGATGAATGCAGTTACGCCATGATTCTACAGCAAAATCATAACTTATACCTATACTATTTTACTCATTCTCCCCAATCCTACTTCTTTTCTGTGTCTGGAGCGGTGAAGGATCTAGATTTGGTCCCTGCTGTGCTTGAATGGGAGATTCTCAACGATTTCAGCCTTAAACTTCCTGCTGCAAATCTCTCTCGCTGTTTTGACACTAATATTACTTCTTCACTCCATAAACGTTCAGGCCAGAGATGTTCCTGCACCACCGGTCCGGGTAATGCATACCTTCAAGGAGGTTGTTTAGGTAAATATATAATTAAGCTTTATAATTATAATGTTGACAGCATTGAATCAATAAGTCCCATAACAATATCTGCTGTCATAAAAGGACTTTCTACAAGTTTAGGATCCATTATTTTACTCATTGTTTTATGGCGAGTGTTCAAGGCTACAAAATTAATAATAGTACAGAAGTACAGAGAAAAATTGTTCAAAAGAAATGGAGGATTGTTGTTACAACAAATATTGTCTTCTGGTAAAGTTAATGTGGATAAAGTTAAACTCTTTAGCTTAAAAGAATTGGAGATGGCGACGGATAACTTCAATATAAATAGAGTACTCGGAAAAGGAGGTCAAGCTACTGTTTACAAAGGCATGTTGGTAGATGGAACGATTGTTGCAGTGAAAAAATTTAAGATCGAAGGAAAGATCGAAGAATTCATCAATGAATTTGTTATTCTTTCACAAATTAATCATAGAAATGTGGTCAAGTTGTTAGGAAGTTGTTTGGAGACTAAAATTCCTTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATCAACAAAATGAAGATTTGCCAATGACATGGGAGATGCGTTTGAGAATTGCCACTGAAGTTGCAGGAGCCTTGTTTTACTTGCACTCTGCTGCTTCTCAGCCTATTTATCATAAAGATATCAAGTCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAAGTAGCAGATTTTGGTACATCAAGAGTTATTTCAATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGACCCTGAATTTTTTCGAACTAGTAAATTCACAGAAAAAAGTGATGTCTACAGTTTTGGAGTAGTTCTTGTTGAACTCTTAACGGGACAAAAGCCGATTACCCTTCTAAGTCCAGAGGAAGCCAGAAGTTTAGCTTTATATTTCATTACATGTGTGGAGGAAAATTGTGTGTTTGATATTATTGATGAAAAAGTGATGAAGGAAGGGGAGAGAGATCATATCATGAAAGTTATCAATCTTGCAAGTAGATGTTTAGAGTTAAATGGAAAGAGACGACCAACTATGAAGGAAATCACATTAGAATTAGAAGGTATTCGAAAAGTGAAAAATGTACTTAATGCACAAGAAGGACATAATGAACTTGTTAGAAGTGAAGAGTATCAATCTTGGGATGATAATTCTACTATTTCAGAAATAAGGTCAACTTTTAATCTTAGTAGCGGAGCACCGAGCACGGAAGATATTCATATTTTTACCATATAA 2187 0.3809 MILKLVLHFIVLVIWSVGVEVSAQDHPSVAKPGCDSRCGDLQIPFPFGMKSSECYAEKWFEIECRNSATYHQTPYLKSIGVEVTSIDVGRGTVTINHPIYRSNCGTKHSPPVNYSLKGSPFVYSQKYNKFVATGCNIIGYLEVNGSEGSGCVSICDQDYTVDDIGKTDLSKAGCNGKWCCANSLPPFLTEYRGGIKGLKENERGDECSYAMILQQNHNLYLYYFTHSPQSYFFSVSGAVKDLDLVPAVLEWEILNDFSLKLPAANLSRCFDTNITSSLHKRSGQRCSCTTGPGNAYLQGGCLGKYIIKLYNYNVDSIESISPITISAVIKGLSTSLGSIILLIVLWRVFKATKLIIVQKYREKLFKRNGGLLLQQILSSGKVNVDKVKLFSLKELEMATDNFNINRVLGKGGQATVYKGMLVDGTIVAVKKFKIEGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFEYLHQQNEDLPMTWEMRLRIATEVAGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRVISIDVTHLTTVVQGTFGYLDPEFFRTSKFTEKSDVYSFGVVLVELLTGQKPITLLSPEEARSLALYFITCVEENCVFDIIDEKVMKEGERDHIMKVINLASRCLELNGKRRPTMKEITLELEGIRKVKNVLNAQEGHNELVRSEEYQSWDDNSTISEIRSTFNLSSGAPSTEDIHIFTI 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02145 728 FunFam Protein kinase superfamily protein 434 479 - -
Viun6g02145 728 Pfam Wall-associated receptor kinase galacturonan-binding 34 96 IPR025287 GO:0030247
Viun6g02145 728 SMART serkin_6 402 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02145 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Viun6g02145 728 SUPERFAMILY Protein kinase-like (PK-like) 384 670 IPR011009 -
Viun6g02145 728 ProSiteProfiles Protein kinase domain profile. 402 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02145 728 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 681 IPR045274 GO:0007166
Viun6g02145 728 Gene3D Transferase(Phosphotransferase) domain 1 476 697 - -
Viun6g02145 728 Gene3D Phosphorylase Kinase; domain 1 374 475 - -
Viun6g02145 728 FunFam Wall-associated receptor kinase 2 476 693 - -
Viun6g02145 728 Pfam Protein tyrosine and serine/threonine kinase 403 669 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02145 Viun-Chr6 27413911 27419700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02145 7 674 Receptor kinase-like Gene Family AT1G16130 42.637 2.58e-167 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun6g02145 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02145 - - gmx:100775935 881.322