Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02144 ATGATTCTGAAATTGGTATACCATTTCATGATTTTGATACTATGGTTTATACATGTAGATGTATCTGCACAAGGTGACCTATATGTAGCAAAGCCTGGCTGTGATTCGCAGTGTGGAGATCTTCAAATTCCCTTTCCCTTTGGAATGAAGAGTTCAGAATGTTACGCAGGGAAATGGTTTGAAATAGAATGCAGAAACACTTCCACATATCAAACACCTTACCTCAAGTCAATAGGAGTGGAAGTAACATCCATTGATGTGGAAGGAGGCACGGTTACTATCAATAATCCCATTAACCGTGATAACTGCGGAACCAAACATTCTCCGGCGGTGAACCAGTCGTTGGAAGGAAGCCCTTTTGTGTATTCGCAGGAACACAACAAATTTGTTGCCGCAGGTTGCAATATTATTGTTTTTTTGCAGGTAAATGGGACAGAAAGTAGTGGTTGTGTGTCGATCTGCGACGAGGACTTGAAGGTGGATGATATTGGAAAAATGGAGCTTAAAAACAGTGATTGTAATGGGAAGAACTGCTGTCAGAATTCCCTGCCACCGTATCTTAAGGAATACAGCACCCAAGTAAAAGGTTTGAAGGAGAATGTAACGGATGGTGAGTGCAGTTACGCCATGGTTATACAGCAAAATCTGAACTCATACGACTACCTAAGCTATCCTTACTATGCTCCCAAAAGCTACTATTTTCCTGTGAATGGTGAGATGAAGGATTTAGATGTGGTCCCTGTGGTGCTTGAATGGGAGATTCTCAACAATATGAACCTTAATCTCCCAACACTTTCTCAGTGTTATGACACTAATGTTACTTCTTCACGGTATAAACGCTCAGGTCAGAGATGTTCCTGCTTAGGCGGTTCCAGTTTCGGTTCCAACCCCTACCTTGAGGGAGGTTGTTCGGCCGATTATTCGGTCTACCAGAATTCGCCAAGTCACCTAACAATATCCGTCATAAAAGGAATTTCTATAAGCTTTGGATCTATCATTTTACTTCTGATTTTATGGCGGGTGTTCAAGGTTACAAAAAAAACCATAGTGAAGAAATGGAGAGAAAAATTCTTCAAAAAAAATGGTGGATTATTGTTACAACAAAGATTGTCCTCTGGTGAAATAAACGTGGATAAAGTTAAACTCTTCAGCTTAAAAGAATTGCAGAAGGCCACTGATAACTTCAATGCAAATAGAGTACTTGGAAAAGGCGGTCAAGCTACTGTTTATAAAGGCATGTTAATAGATGGAACGATTATTGCAGTGAAAAAATTTAAGGTCCAAGGAAAGATTGAAGAATTTATTAATGAATTCGTCATCCTTTCACAAATTAACCACAGGAACGTGGTTAAGTTGTTAGGAAGTTGTTTGGAGACTAAAATTCCTTTGCTTGTCTATGAATTCATTCCTAATGGCAATCTTTTTGAGTACTTGCATCAACAAAATGAGGATCTGCCAATGACATGGGAGATGCGTTTGAGAATTGCCACTGAAGTTGCAGGAGCCTTGTTTTACTTGCACTCTGCTGCTTCTCAGCCTATTTATCATAAAGATATCAAGTCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAAGTAGCAGACTTTGGTACATCAAGAATGATTTCTATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGACCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTCTACAGCTTTGGAGTTGTTCTTGTTGAACTTTTAACTGGGCAAAAGCCAATAACCCTCCTAAGTCAAGAGGAAGCCAAAAGTTTAGCTTCATATTTCATCATGTGTGTGGAGGAAAATTGTGTGTTTGATATTATTGATGAAAGAGTGATGAAAGAAGGGGAAAAAGATCATATTATGAAAGTTGTCAACCTTGCAAGTCAATGTTTAAAGCTGAATGGAAAGAGGCGACCAACTATGAGAGAAATCACCTTGGAATTAGAGGGTATTCGAAAATTGGTAAAGGAGTCTAATGCACAAGAGTTACATAATGAGTTTGTTAGAAGCGAAGACTGTCAATCTTGGGATGATAATTCTATTATATCAGAAATAATATCAACTTTTGATCTAAGTAGCAGAACAACAATCTTGAAAGATGTTCACATTGTTACCATATGA 2166 0.3809 MILKLVYHFMILILWFIHVDVSAQGDLYVAKPGCDSQCGDLQIPFPFGMKSSECYAGKWFEIECRNTSTYQTPYLKSIGVEVTSIDVEGGTVTINNPINRDNCGTKHSPAVNQSLEGSPFVYSQEHNKFVAAGCNIIVFLQVNGTESSGCVSICDEDLKVDDIGKMELKNSDCNGKNCCQNSLPPYLKEYSTQVKGLKENVTDGECSYAMVIQQNLNSYDYLSYPYYAPKSYYFPVNGEMKDLDVVPVVLEWEILNNMNLNLPTLSQCYDTNVTSSRYKRSGQRCSCLGGSSFGSNPYLEGGCSADYSVYQNSPSHLTISVIKGISISFGSIILLLILWRVFKVTKKTIVKKWREKFFKKNGGLLLQQRLSSGEINVDKVKLFSLKELQKATDNFNANRVLGKGGQATVYKGMLIDGTIIAVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFEYLHQQNEDLPMTWEMRLRIATEVAGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLLSQEEAKSLASYFIMCVEENCVFDIIDERVMKEGEKDHIMKVVNLASQCLKLNGKRRPTMREITLELEGIRKLVKESNAQELHNEFVRSEDCQSWDDNSIISEIISTFDLSSRTTILKDVHIVTI 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02144 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Viun6g02144 721 Gene3D Phosphorylase Kinase; domain 1 367 468 - -
Viun6g02144 721 FunFam Wall-associated receptor kinase 2 365 468 - -
Viun6g02144 721 SUPERFAMILY Protein kinase-like (PK-like) 376 663 IPR011009 -
Viun6g02144 721 Gene3D Transferase(Phosphotransferase) domain 1 469 691 - -
Viun6g02144 721 Pfam Wall-associated receptor kinase galacturonan-binding 34 95 IPR025287 GO:0030247
Viun6g02144 721 ProSiteProfiles Protein kinase domain profile. 395 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02144 721 Pfam Protein kinase domain 396 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02144 721 FunFam Wall-associated receptor kinase 2 469 686 - -
Viun6g02144 721 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 673 IPR045274 GO:0007166
Viun6g02144 721 SMART serkin_6 395 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02144 Viun-Chr6 27405879 27411525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02144 34 667 Receptor kinase-like Gene Family AT1G16130 42.160 2.42e-173 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun6g02144 Pkinase 6.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02144 - - gsj:114368715 904.434