LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g02139	ATGTTGTCAGGGGAAACTAGGCATGATTGTGTGCACTACGAATCCGATGATGAAACCTTTAGCTGTTCTTGCGGGTTCATAGGGTTCGGGAGAAACCAAGTTTATGACAGCAGCATCAATGGAGCAAACAATGAAGATTCAGAGGAGCTATTTGAGATCAATCTGAAGGAGTCATTGGAGACAATATCAGAAGACTGTGAGAGCAGTGTGTTCTCTTTCGACATTCACAACGACAACGACACAGATGTTGTTCATGTGGCAGTAGACCACGTTGGAGAATCAAGCATGGAAGCCCTTTTATGGACTTTGAACCATGCTGTCACACCCTCTACCACTGTCTATCTCATACACGTTTTTCCTCAAATCAGACTCATCCCAAGCCCATTTGGAAAATTTCCTAGGAATCGTGTGAATGCAGAGTATGTTTACTTTCACTTGACTCAACAGAAAAGCAAGAGAATATTGCTCCTTCAAGAGTTCATTGACTTGTGCCTTGATTCAAAGGTTAAGGTGGAAGTGATGGTTGTAGAGGGTGACAACGTTGCCAAAGCAATAACAGAACTAGTTAGAGATCATGATATAAGAAAACTAGTGATTGGAATCACCAAATCTAATTTAAGCAAATCCGTGTCTAGAAGGAGAAATGGTATAGCAGATAAGATCCTGAGAAATGCAGCAGAGATCTGTGATGTTAAAATGATATGCGATGGAAATGAAGTGACAGATGAAATGATTAGCAGTTTCGGAGTTGCACATGAAGAGAATGAATCATGTGGTTTTGTTCCTCTTATGCGTTTTGTGTCCAATCCTATATGGCTATTTAGACCCAGATTTTGA	837	0.4062	MLSGETRHDCVHYESDDETFSCSCGFIGFGRNQVYDSSINGANNEDSEELFEINLKESLETISEDCESSVFSFDIHNDNDTDVVHVAVDHVGESSMEALLWTLNHAVTPSTTVYLIHVFPQIRLIPSPFGKFPRNRVNAEYVYFHLTQQKSKRILLLQEFIDLCLDSKVKVEVMVVEGDNVAKAITELVRDHDIRKLVIGITKSNLSKSVSRRRNGIADKILRNAAEICDVKMICDGNEVTDEMISSFGVAHEENESCGFVPLMRFVSNPIWLFRPRF	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g02139	278	Gene3D	HUPs	72	234	IPR014729	-
	Viun6g02139	278	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	43	247	-	-
	Viun6g02139	278	Pfam	Universal stress protein family	84	225	IPR006016	-
	Viun6g02139	278	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	91	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g02139	Viun-Chr6	27375305	27377034	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g02139	84	237	U-box Gene Family	AT2G45910	27.848	1.55e-13	68.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g02139	-		-	gmx:100818837	429.483