LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g02066	ATGGGTGGAAGAATACTGATACCACTGTTGCTTTTCTTCAACTGTTTGTTCTTTGCAGTGGCACAAGATATTACCAAAGATCTTGAAGTTCTGAAGTCTCTGAGTGAGTCTTGGCAAGGCCAAATTCCAAACTGGGAGGGTTCAGATCCTTGCAGTTGGTATGGCATTAACTGCAGATACTCACGTGTGGTTTCCATATCATTAACAGATATTGGTTTGACCGGCCAGCTTTCTGGAGATATTGGATCACTTTCTGAATTGGATAATCTGGATCTCTCATACAATAGGGGACTAACAGGACCACTTCCACGAGAAATTGGAAACTTGAAGAAGCTAACGAAATTAACTCTTGTTGGTTGTGGTTTTACTGGTGGTATTCCAGATGCAATAGGATCTCTGCAACAACTTGAAGTCTTATCTTTAAACTCCAACAACTTTGCTGGATTAATTCCACCTTCTATTGGCAATCTGTCAAATCTTACTTGGCTGGATTTAGCTGACAACCAGCTTGATGGATCCATCCCTGTATCTAGTGACACTACCCCTGGTCTTGATATGTTATACAATGCATTGCACTTTCATCTTGGGAAGAATAGGCTTTCAGGACAAATTCCTCCGAAACTTTTTAGCTCGAAAATGGCTCTGATACATGTGATTTTTCACAGCAATCATCTAGATGGCAGCATTCCTGAAACGCTTGGGCTAGTTACGAGTTTGACAGTGGTGCGCTTTGAAAATAATTCACTGAATGGACATGTGCCTCAGAGCCTCAACAACCTTATCAGTGTCACAGACCTGTTGTTATCCAACAATAAGCTGGAAGGTGCCATGCCAAACCTTACTGGGATGAACTCCCTAAGATACTTGGATCTGAGCAATAATAGCTTTGAAGAGTCAAACGTTCCACTGTGGCTTTCGAATCTGAAGAGTTTAACAACATTACAAATGGAGAATTTGTACCTAGTTGGAACAATTCCGAATTTTTTATTCAGCCTTGCCAATTTACAGAATGTTGTGCTGAAAAACAACCACCTTGGTGGAACCTTGGATATTGGAACCAACTATAGCAAACAACTGCAACTTATAGATTTGAGGTCAAATTCAATTCAGGACTATAAGCAACCAAATGATCCCCCACATATCAGGATAATGCTCGCACACAACCCGGTTTGCACAGAAACAGGACCAGAAACTATGGAGGATTACTGCACCAACCTGGATATCTTCGATACAAAACAACAAAATAACTGTCAACATGGTAGCTGCAGCCCGGATCAGACTCTCAGTCCCAACTGCAAATGTGGATATCCATATACAGGAACTTGGACTTGCAGAGCCCCTTCCTATTTTGAATGGAGCAATACAACAACCCTGGAGGAATTTCTAATGCATGAATTTCAATATCATCATCAACCTGTCGATTCAGTTTCTCTAATCCCTTCAACTAAAGATCCATTTCGGGGCTTTGAATTTATCATACAAATTTTCCCACTAGACCAAAATCATTTCAGCCAACTAGACAAATCTAATATAAGCTTTTTGCTGCGCAACCTAAGTGCATATAGTGCATTTGATTTTATTACAGGAAACCATGTTGAAGGACCTAAGCAGTCAAGTAATTCATCAAACTCTGCAATAATTATTGGAGTAGCAATTGGAGGTTCTTCTTTGTTGCTACTGTTATTAGCCCTGGCAGGTTTTTATGCTTTCCGCCAGAGGAGAAGGGCAGAAAGAGCAATATCTCGAAGCAATCCTTTCGGAAACTGGGATCCCAATAAAAGCAACTGCGGCACCCCTCAGTTAAAAGCACCAAGGCAGTTCTCTTTTAAGGAAATTCAGAAATACACAAACAACTTCTCACAAGCCAATGATGTTGGATCAGGGGGTTATGGAAAGGTTTACCGGGGAACTCTTCCCACAGGGCAAGTTGTAGCCGTAAAGCGAGCTCAAAAAGAGTCAAAGCAGGGAGCGCAAGAATTCAAAGCTGAAATTGAACTCCTCTCCCGGGTCCACCACAAAAATCTGGTTAGGCTTGTGGGATTCTGCTTTGAACACGAAGAACAAATGCTGGTTTACGAGTTCGTTCCTAATGGAACTTTGAAGGATGCTCTCACATGGAAACGTGGAATCACGTTGAGCTGGAGCAGAAGGCTGAAAGTAGCCCTTGGTACTGCCAGGGGTTTGGCTTATCTTCACGAACATGCTGATCCCCCTATTATACACAGGGACATCAAGTCAAACAACATTTTGCTAGATGAGAACTATAATGCTAAAGTCTCTGATTTCGGTCTCTCTAAGTCCATCTTAGATGATGATGATCATGTTACCACTCAAGTTAAAGGAACAATGGGCTACTTGGATCCAGATTATTATACTAGTCAGCGGTTGACTGAAAAGAGTGATGTTTATAGTTTTGGAGTGCTAGTGCTGGAGCTAATTACTGCAAAAAGGCCAATAGAACGAGGGAAATACATTGTGAAAGTGGTCAGGAATACAATAGATAAGACAAAAGACTTGTATGGTCTTCACGAAATTATTGATCCAGCCATTTGTTCAGGATCAACACTGCAGGGTTTTGAGAAGTTTGTTGACCTTGCAATGGAGTGTCTTCAAGATTCAGGAGTCGACAGGCCCACAATGAGTGAAGTGGTTAAAGAAATTGAAGAAATGTTGCGATCTCTCGGTTTGAACCTAACATCTGAATTAGCGGCATCCTCTTCATCCAGTCATAGATTTCATGAGGTGAGTATAGTGAGTTCCCAACAAGACCACCTTTACAGCAATGAATCTGTTGTTTCAAGTGCAGAAAATTTGTATTCAACAAGTGAGCATAGTTAA	2838	0.4126	MGGRILIPLLLFFNCLFFAVAQDITKDLEVLKSLSESWQGQIPNWEGSDPCSWYGINCRYSRVVSISLTDIGLTGQLSGDIGSLSELDNLDLSYNRGLTGPLPREIGNLKKLTKLTLVGCGFTGGIPDAIGSLQQLEVLSLNSNNFAGLIPPSIGNLSNLTWLDLADNQLDGSIPVSSDTTPGLDMLYNALHFHLGKNRLSGQIPPKLFSSKMALIHVIFHSNHLDGSIPETLGLVTSLTVVRFENNSLNGHVPQSLNNLISVTDLLLSNNKLEGAMPNLTGMNSLRYLDLSNNSFEESNVPLWLSNLKSLTTLQMENLYLVGTIPNFLFSLANLQNVVLKNNHLGGTLDIGTNYSKQLQLIDLRSNSIQDYKQPNDPPHIRIMLAHNPVCTETGPETMEDYCTNLDIFDTKQQNNCQHGSCSPDQTLSPNCKCGYPYTGTWTCRAPSYFEWSNTTTLEEFLMHEFQYHHQPVDSVSLIPSTKDPFRGFEFIIQIFPLDQNHFSQLDKSNISFLLRNLSAYSAFDFITGNHVEGPKQSSNSSNSAIIIGVAIGGSSLLLLLLALAGFYAFRQRRRAERAISRSNPFGNWDPNKSNCGTPQLKAPRQFSFKEIQKYTNNFSQANDVGSGGYGKVYRGTLPTGQVVAVKRAQKESKQGAQEFKAEIELLSRVHHKNLVRLVGFCFEHEEQMLVYEFVPNGTLKDALTWKRGITLSWSRRLKVALGTARGLAYLHEHADPPIIHRDIKSNNILLDENYNAKVSDFGLSKSILDDDDHVTTQVKGTMGYLDPDYYTSQRLTEKSDVYSFGVLVLELITAKRPIERGKYIVKVVRNTIDKTKDLYGLHEIIDPAICSGSTLQGFEKFVDLAMECLQDSGVDRPTMSEVVKEIEEMLRSLGLNLTSELAASSSSSHRFHEVSIVSSQQDHLYSNESVVSSAENLYSTSEHS	945

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g02066	945	ProSitePatterns	Protein kinases ATP-binding region signature.	625	647	IPR017441	GO:0005524
	Viun6g02066	945	SUPERFAMILY	L domain-like	32	393	-	-
	Viun6g02066	945	FunFam	Leucine-rich repeat protein kinase family protein	180	279	-	-
	Viun6g02066	945	Pfam	Leucine rich repeat N-terminal domain	27	58	IPR013210	-
	Viun6g02066	945	Gene3D	Ribonuclease Inhibitor	185	377	IPR032675	-
	Viun6g02066	945	Gene3D	Phosphorylase Kinase; domain 1	590	694	-	-
	Viun6g02066	945	PANTHER	RECEPTOR-LIKE PROTEIN 55	36	890	-	-
	Viun6g02066	945	FunFam	Leucine-rich repeat protein kinase family protein	588	694	-	-
	Viun6g02066	945	Gene3D	Transferase(Phosphotransferase) domain 1	695	904	-	-
	Viun6g02066	945	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	695	903	-	-
	Viun6g02066	945	Gene3D	Ribonuclease Inhibitor	22	184	IPR032675	-
	Viun6g02066	945	SMART	serkin_6	619	891	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02066	945	Pfam	Protein kinase domain	620	885	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02066	945	CDD	STKc_IRAK	625	890	-	-
	Viun6g02066	945	SUPERFAMILY	Protein kinase-like (PK-like)	605	909	IPR011009	-
	Viun6g02066	945	ProSiteProfiles	Protein kinase domain profile.	619	891	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02066	945	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	739	751	IPR008271	GO:0004672\|GO:0006468
	Viun6g02066	945	FunFam	Leucine-rich repeat family protein	26	179	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g02066	Viun-Chr6	27020006	27029839	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g02066	2	920	Receptor kinase-like Gene Family	AT5G49760	50.959	0.0	845

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Viun6g02066		Pkinase	4.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g02066	-		-	vra:106775737	1385.93