Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02048 ATGGGGGATCAGGGTGTTTTAGGTGTTAATGTTGGAAGAGAGGAGGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAAACGAGGAAGCGTGGAAAGAGACTGAGGAGGCTCTGGTGGGAGGGTTGAAGGACGAACTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGTTTGAAAATCCAAGTTCTGGGTTTTCTGGAATTGGAGTTGTAATGGAAAGGTCACCAGGGCTTCCTGCTATAAGGGTGCAGAAAAAACTTGACTTTTATGCGGAGGAGTCTGTGGTTGACTACTTGGCACTCTTGGATGGTTTGCTGGAAGCTGTGCGGAAAAAGATCCGCAGGGTTTATGCTTTCACAGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGAAAAAAATGGACATGCCTCTTTTGTTGGCATTGAGAGAAAGGATTCTGGAACTTACCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCCTCTACTGATCTTGAGCAGCCACTGCATTTTGCCAAAGTAGCTATTGGACTAGTCACTTTCCCCATAAATGGTGAGAGATTGCTTAAGAATTGTTCTATTTGCTGTGATGACAAGCCAGTGCAAATTATGATTACCCTGAAATGTTCGCACATATTCTGTTCACATTGCCTGAGGGCCTATGCCGATGGTAAAGTACAATTATCTCAAGTTCCTATAAAATGCCCTCAACCGGGGTGCAAGTATTGCATCTCTGCAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCATTTGAATCCCTGGAGAAAGCCCTTTCCCAAGCGGATATTGACCATTCAGATAGAATTTATTGTCCATTTCCAAATTGTTCTGTTCTCCTGGATACTCTTGAATGTGTATCAGCTAGAAGTTCATCTAGTCAGTCTGACAATTCTTGTCTCGAGTGTCCTGTTTGTAAGAGGTTTATCTGCGTGGACTGTAAGGTTCCTTGGCATTCTTCCATGAATTGTCTAGAATTCCAGAATCTGTCAGAAGACGAGAGGGATGCTTCTGACATATCCTTGCACCGTCTTGCTCAAAATAAGAGGTGGAAGCGTTGTCAGCAATGTCGTACAGTGATTGAACTTACTCAAGGCTGTTACCACATGGCATGCTGGTGTGGTCATGAATTCTGCTATTCTTGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAATGTGCATATTGGGATGAAAATAACTCAGAAAACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAACTCTCTTTCCATGATCGTGGATGCATACTCGGACCAAGAAAGATCACAGCTTGCGCTGATTCAGAGGTTTCTGGCCGGCGGTTTCAGCCTCAGTGACCACAATCCTTACCAGTCTCCTCCTCGCTGTACAGATTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTACGAAGATTACATTCAATGA 1542 0.4345 MGDQGVLGVNVGREEEEDEFCSCCGDENEEAWKETEEALVGGLKDELDEFSVKMFFKGLSMAGFENPSSGFSGIGVVMERSPGLPAIRVQKKLDFYAEESVVDYLALLDGLLEAVRKKIRRVYAFTDSELLHDQITFGKKMDMPLLLALRERILELTNNFEDFVLKLIPSTDLEQPLHFAKVAIGLVTFPINGERLLKNCSICCDDKPVQIMITLKCSHIFCSHCLRAYADGKVQLSQVPIKCPQPGCKYCISATECRSFLPFTSFESLEKALSQADIDHSDRIYCPFPNCSVLLDTLECVSARSSSSQSDNSCLECPVCKRFICVDCKVPWHSSMNCLEFQNLSEDERDASDISLHRLAQNKRWKRCQQCRTVIELTQGCYHMACWCGHEFCYSCGAEYREGQQTCQCAYWDENNSENSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02048 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 278 IPR013083 -
Viun6g02048 513 FunFam RBR-type E3 ubiquitin transferase 336 461 - -
Viun6g02048 513 Pfam IBR domain, a half RING-finger domain 276 338 IPR002867 GO:0008270
Viun6g02048 513 Pfam IBR domain, a half RING-finger domain 357 407 IPR002867 GO:0008270
Viun6g02048 513 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 134 460 IPR031127 GO:0004842|GO:0016567
Viun6g02048 513 SUPERFAMILY Ribonuclease H-like 68 170 IPR012337 -
Viun6g02048 513 Gene3D - 52 186 IPR036397 GO:0003676
Viun6g02048 513 SUPERFAMILY RING/U-box 351 415 - -
Viun6g02048 513 Gene3D - 336 461 - -
Viun6g02048 513 FunFam RBR-type E3 ubiquitin transferase 52 187 - -
Viun6g02048 513 CDD BRcat_RBR_unk 281 341 - -
Viun6g02048 513 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Viun6g02048 513 SMART ibrneu5 348 407 IPR002867 GO:0008270
Viun6g02048 513 SMART ibrneu5 267 338 IPR002867 GO:0008270
Viun6g02048 513 SUPERFAMILY RING/U-box 199 275 - -
Viun6g02048 513 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Viun6g02048 513 SMART ring_2 368 409 IPR001841 -
Viun6g02048 513 SMART ring_2 200 251 IPR001841 -
Viun6g02048 513 CDD Rcat_RBR_unk 364 400 - -
Viun6g02048 513 ProSiteProfiles TRIAD supradomain profile. 196 413 IPR044066 -
Viun6g02048 513 FunFam RBR-type E3 ubiquitin transferase 196 280 - -
Viun6g02048 513 Pfam Reverse transcriptase-like 67 169 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02048 Viun-Chr6 26914575 26920324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02048 51 398 C3H Transcription Factor Family AT2G19610 25.634 1.85e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02048 - - gmx:100783040 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02048 6 26914575 26920324 Viun6g02048 6 26914575 26920324 ECH