Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02045 ATGGAAACCGGTGCTGGCGGTAGCCAAGCCCAACGAAGCGGTAACACCGCAAGAGGAATTCCGCCACCGCCACCGCAACCGCCTGAGGAACCGAATCTACTGCCAGAATGCCGACGACCAAGTGGAACCGAGCCGGACCTCATTCTGCAACCTGAATGGCGTCGTCGGAGGCCAAGCGCTCCTCCTTCCGAACCTTCCAACCGTGGCGGCGAAGAGAAAATTCTTCTCCAACCAGAATGGAGGCGTTCGAAGCCGAGTGCGAGTGTCAGTGTCAGTGCCAGTGCCAGTGCCGGTGCCAGTGCGAGTACTAGTGTTTGGGAACCTGAATGGAGACGATCGAGAACAAGTTCAACGGCATTTCCGTGGGACCAGAATTACAGTGTTCGCAAACCTAGTGCGTCGAGCTCCAGTGGCGTTGAAAGACGCGGTGACCCTAACGACCTTTGGCGAGCTGCTCCGGCTACAGATTCTGTTGTTCCCAAGCTGGAAAAACTACAAATATCAATACAGTTACCTACATCAACTTGTACTCATGATAAAAAGGATAAAATATCACCTATTCAGAGACCTGATAATGGTGGCACGATAGCAATTCTAACTAGCAGACTCCGTGTCAATCACTTCCCTGTTAAGTTTGATCCAGAGCGTACCATAATGCATTATAGTATTGGTGTCAAGCCTAAGGTTTCTTCAAAATTTGGTCAGCCTCAGAAATTATCAAAGTCTGATCTATCCATGATCCGAGAGAAACTGTTTTCTGACGATCCTGAGAGGTTGCCCTTGGAGATGACTGCACATGACGGTGCAAAAAATATTTATAGTGCAGTACAGTTACCAGAAGAGACCTTTACTGTGGAGATCACTGATGGGGAGGACGAAAAGATTATTTCGTATAGTGTTACATTAACTCTTGTTAATAAACTCAGACTTTGCAAGTTAATGGACTATCTTAGTGGGCATAACCTCTCCAATCCTAGGGATATTTTACAAGGTATGGATGTGGTGGTGAAAGAGAATCCTGCTAGACGAACTGTTTCCGTAGGAGGACGCTATTATCCCACAAATCCTCCTGTAGTAATGAAGGATCTTCACCATGGAATAATTGCTGTTGGGGGATTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTTTTGGCTTTTCGGAAGGGAATGCCAGTCTTGGATTTCTTGCATGAGTGTATTGATAACTTTAAATTGGATGAATTCGAAAAATTTAGGAAATGTGTTGATGACGCACTTGTTGGATTGAAAGTCAGCGTGACTCATCGTAAAAGCAATCGGAAATACATTATTTCAAGATTAACTCCTATGATTACAAGGTATGTCACTTTTCCCATTGACAATACCGGTGGATGGAATCGCCCAATGGATGTTAGTCTTCTTACCTTTTTTAAAGACAAATATGGCAAGGAAATTATGTACAAAGATATTCCTTGTTTAGATTTAGGGAAAGACAAGAAGAACTATGTACCCATGGAATTCTGTGTTCTAGTTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGGTAGTATTTCTGCAAATACATTGAAAACAATGTCACTAGCTCACCCAACCGAGAGGGAGTGTGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGGGGTGGTTTTACTCAAAATTTTGGAATGAGTGTCAACACAACTATGACAACTATTGTAGGACGTGTACTTGGCCCTCCAGAATTAAAGTTAGGTGATCCAAATGGGAAGACCATTAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGATCAATGGCGGAAGGTAAACCAGTTGAGCATTGGGGCATTATTGATTTCACTAGTCTTGGGCCATTTAGGTACAAATTAAGAGGCAAGGATTTCATTCAAAAGCTTATAGGCAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTCGCGAGTTATGATTTACTATCCGAGTTACTTGAGAAAATTAACAACATTTGTAAATATAACCAAGTACACCTGCAATTTCTTCTGTGTGTAATGTCTAAAAAAAGTTCTGGTTACAAGTACCTCAAATGGATTTCTGAGACCAAACTTGGGATAGTAACACAATGCTGCTTGTCTAACGGTGCTAATGAAGCAGAGGACAAATTTTATACTAATCTGGCTCTCAAGATCAATGCCAAACTTGGAGGCAGCAACGTGGAGCTCAGTAATGGACTCCCTTACTTTGTGGGTGAAGGACATGTGATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTCGCCACTGTTAACTGGCCTGCTGCAAATCGTTATGCTGCACGTGTATGCCCACAATACAATCGAAGTGAGAAAATACTGAGCTTTGGGGATGTTTGCCTCGAGCTTGTTTCATGCTATAGGAGTATGAACAGAGTCAGGCCTGAAAGAATTGTTATTTTCCGTGACGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAACGAAGAACTTCTCGATTTGAAGAGAGCATTTCAAAGAGTAAACTACTTTCCAACAATCACTCTTATTGTGGCACAAAAACGACATCAAACTCGATTTTTTCCAGAGGGGTGGAGGGATGGATCTTCTAGTGGCAATATTTTACCAGGAACAGTTGTGGACACAAAAGTTATTCACCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTAGGTACAAGCAAACCTACTCATTACCATGTTTTATGGGACGAGCACAAGTTTACATCTGATGAATTACAGAAGCTCATATACGAGATGTGCTTCACCTTTGCCAAGTGCACTAAACCTGTTTCTTTAGTTCCTCCTGTTTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAAGCAAGCAAAAGATGCTTCCTCACTTTCACGAACCACTTCATTTGAACAGGGATTTTACACGCTGCATGCTGACCTACAAAACATAATGTTCTTTATCTAA 3117 0.4264 METGAGGSQAQRSGNTARGIPPPPPQPPEEPNLLPECRRPSGTEPDLILQPEWRRRRPSAPPSEPSNRGGEEKILLQPEWRRSKPSASVSVSASASAGASASTSVWEPEWRRSRTSSTAFPWDQNYSVRKPSASSSSGVERRGDPNDLWRAAPATDSVVPKLEKLQISIQLPTSTCTHDKKDKISPIQRPDNGGTIAILTSRLRVNHFPVKFDPERTIMHYSIGVKPKVSSKFGQPQKLSKSDLSMIREKLFSDDPERLPLEMTAHDGAKNIYSAVQLPEETFTVEITDGEDEKIISYSVTLTLVNKLRLCKLMDYLSGHNLSNPRDILQGMDVVVKENPARRTVSVGGRYYPTNPPVVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKGMPVLDFLHECIDNFKLDEFEKFRKCVDDALVGLKVSVTHRKSNRKYIISRLTPMITRYVTFPIDNTGGWNRPMDVSLLTFFKDKYGKEIMYKDIPCLDLGKDKKNYVPMEFCVLVEGQRYPKERLGSISANTLKTMSLAHPTERECAIHKMVQSSDGPCRGGFTQNFGMSVNTTMTTIVGRVLGPPELKLGDPNGKTIKLTVDLEKCHWNLAGRSMAEGKPVEHWGIIDFTSLGPFRYKLRGKDFIQKLIGKYKKLGIYMQEPIWYEESSMKILASYDLLSELLEKINNICKYNQVHLQFLLCVMSKKSSGYKYLKWISETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYFVGEGHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILSFGDVCLELVSCYRSMNRVRPERIVIFRDGVSEYQFDMVLNEELLDLKRAFQRVNYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPKQAKDASSLSRTTSFEQGFYTLHADLQNIMFFI 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02045 1038 Gene3D - 765 1038 IPR036397 GO:0003676
Viun6g02045 1038 Gene3D - 580 760 - -
Viun6g02045 1038 SMART DUF1785_2 345 398 IPR014811 -
Viun6g02045 1038 SUPERFAMILY Ribonuclease H-like 685 997 IPR012337 -
Viun6g02045 1038 CDD Piwi_ago-like 561 995 IPR045246 -
Viun6g02045 1038 Gene3D paz domain 393 518 - -
Viun6g02045 1038 CDD PAZ_argonaute_like 399 513 - -
Viun6g02045 1038 ProSiteProfiles PAZ domain profile. 399 514 IPR003100 GO:0005515
Viun6g02045 1038 MobiDBLite consensus disorder prediction 18 34 - -
Viun6g02045 1038 SMART Piwi_a_2 698 996 IPR003165 GO:0003676
Viun6g02045 1038 MobiDBLite consensus disorder prediction 1 147 - -
Viun6g02045 1038 Pfam Argonaute linker 1 domain 349 397 IPR014811 -
Viun6g02045 1038 MobiDBLite consensus disorder prediction 83 141 - -
Viun6g02045 1038 SUPERFAMILY PAZ domain 394 552 IPR036085 GO:0005515
Viun6g02045 1038 Pfam Piwi domain 699 993 IPR003165 GO:0003676
Viun6g02045 1038 Pfam PAZ domain 403 529 IPR003100 GO:0005515
Viun6g02045 1038 MobiDBLite consensus disorder prediction 1 16 - -
Viun6g02045 1038 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 202 998 - -
Viun6g02045 1038 SMART PAZ_2_a_3 399 536 IPR003100 GO:0005515
Viun6g02045 1038 Pfam N-terminal domain of argonaute 202 336 IPR032474 -
Viun6g02045 1038 ProSiteProfiles Piwi domain profile. 698 997 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02045 Viun-Chr6 26898596 26903308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02045 203 1037 Eukaryotic Initiation Factors Gene Family AT1G48410 34.655 5.47e-145 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02045 K11593 - gmx:100783571 1783.46