LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g02001	ATGGAACATGGAAGACCTGCAAGTAGAAAAAAATTGAGAGATTTATTGCTTAAAAAAGAAAATCGTTGTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTCGGTACTCATATATCAAAGGTTTTGTCTGTGGCATTGGATGACTGGTCAGAGGATGAAATAGATGCAATGATAGAGGTTGGGGGAAATGCTTCTGCTAATTCAATATATGAAGCTAATATTCCTGAAGGAGTTACAAAACCCGGACCAGATGCTGATCATGAGCAGCGTTCGAACTTCATAAGGTCAAAATATGAATTTCAAGAATTTCTGAAACCGAGTTTGCGCATTATATCTGGAAAAGGCAGTCTAGAATCAAGTTCTACAAAAAGTGCTAAGGATAGTTTTAGAAGTACTAGTACAGAGAGAAAGGAAGGTATGGTAGAATTTATTGGACTGTTGAAAGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGGGATATAAAGTCAAGTGATCCGTATGTCATTTTGAGCCTTGGCCAGCAGACTGTCCAGACATCTGTAGTGAGTAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCAGAGGATTATGGACAGATGAAATTGAAAGTATTTGATCATGACACATTTTCCGCTGATGATATTATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTTATTGAGGATAGCACAGTCCATATTACTGAGGGTAAGGTTAAACAAATGATGTCACTAAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAG	966	0.3851	MEHGRPASRKKLRDLLLKKENRCCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVALDDWSEDEIDAMIEVGGNASANSIYEANIPEGVTKPGPDADHEQRSNFIRSKYEFQEFLKPSLRIISGKGSLESSSTKSAKDSFRSTSTERKEGMVEFIGLLKVKVIKGTNLAIRDIKSSDPYVILSLGQQTVQTSVVSSNLNPVWNEEYMLSVPEDYGQMKLKVFDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVHITEGKVKQMMSLKLQNVESGELDLELEWIPLDQ	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g02001	321	SMART	C2_3c	166	261	IPR000008	-
	Viun6g02001	321	PRINTS	HIV Rev interacting protein signature	21	40	IPR001164	GO:0005096
	Viun6g02001	321	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Viun6g02001	321	PRINTS	HIV Rev interacting protein signature	40	57	IPR001164	GO:0005096
	Viun6g02001	321	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	9	123	IPR001164	GO:0005096
	Viun6g02001	321	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	7	321	IPR044518	GO:0005096\|GO:0005543
	Viun6g02001	321	CDD	ArfGap	20	118	-	-
	Viun6g02001	321	Pfam	C2 domain	165	255	IPR000008	-
	Viun6g02001	321	Gene3D	Arf GTPase activating protein	2	129	IPR038508	-
	Viun6g02001	321	SMART	arf_gap_3	9	131	IPR001164	GO:0005096
	Viun6g02001	321	CDD	C2_ArfGAP	164	308	-	-
	Viun6g02001	321	Gene3D	C2 domain	163	321	IPR035892	-
	Viun6g02001	321	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	126	IPR037278	-
	Viun6g02001	321	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	163	321	-	-
	Viun6g02001	321	Pfam	Putative GTPase activating protein for Arf	10	125	IPR001164	GO:0005096
	Viun6g02001	321	ProSiteProfiles	C2 domain profile.	146	262	IPR000008	-
	Viun6g02001	321	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	165	308	IPR035892	-
	Viun6g02001	321	FunFam	Arf-GAP with dual PH domain-containing protein 1	5	132	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g02001	Viun-Chr6	26549685	26556212	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g02001	4	321	C2H2 Transcription Factor Family	AT4G21160	71.733	4.70e-178	494

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g02001	K12486		-	gmx:100810806	558.91