Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01997 ATGGAACATGGAAGACCTGCAAGTAGAAAAAAATTGAGAGATTTATTGCTTAAAAAAGAAAATCGTTGTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTCGGTACTCATATATCAAAGGTTTTGTCTGTGGCATTGGATGACTGGTCAGAGGATGAAATAGATGCAATGATAGAGGTTGGGGGAAATGCTTCTGCTAATTCAATATATGAAGCTAATATTCCTGAAGGAGTTACAAAACCCGGACCAGATGCTGATCATGAGCAGCGTTCGAACTTCATAAGGTCAAAATATGAATTTCAAGAATTTCTGAAACCGAGTTTGCGCATTATATCTGGAAAAGGCAGTCTAGAATCAAGTTCTACAAAAAGTGCTAAGGATAGTTTTAGAAGTACTAGTACAGAGAGAAAGGAAGGTATGGTAGAATTTATTGGACTGTTGAAAGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGGGATATAAAGTCAAGTGATCCGTATGTCATTTTGAGCCTTGGCCAGCAGACTGTCCAGACATCTGTAGTGAGTAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCAGAGGATTATGGACAGATGAAATTGAAAGTATTTGATCATGACACATTTTCCGCTGATGATATTATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTTATTGAGGATAGCACAGTCCATATTACTGAGGGTAAGGTTAAACAAATGATGTCACTAAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAG 966 0.3851 MEHGRPASRKKLRDLLLKKENRCCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVALDDWSEDEIDAMIEVGGNASANSIYEANIPEGVTKPGPDADHEQRSNFIRSKYEFQEFLKPSLRIISGKGSLESSSTKSAKDSFRSTSTERKEGMVEFIGLLKVKVIKGTNLAIRDIKSSDPYVILSLGQQTVQTSVVSSNLNPVWNEEYMLSVPEDYGQMKLKVFDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVHITEGKVKQMMSLKLQNVESGELDLELEWIPLDQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01997 321 SMART C2_3c 166 261 IPR000008 -
Viun6g01997 321 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Viun6g01997 321 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Viun6g01997 321 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Viun6g01997 321 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 123 IPR001164 GO:0005096
Viun6g01997 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 7 321 IPR044518 GO:0005096|GO:0005543
Viun6g01997 321 CDD ArfGap 20 118 - -
Viun6g01997 321 Pfam C2 domain 165 255 IPR000008 -
Viun6g01997 321 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Viun6g01997 321 SMART arf_gap_3 9 131 IPR001164 GO:0005096
Viun6g01997 321 CDD C2_ArfGAP 164 308 - -
Viun6g01997 321 Gene3D C2 domain 163 321 IPR035892 -
Viun6g01997 321 SUPERFAMILY ArfGap/RecO-like zinc finger 9 126 IPR037278 -
Viun6g01997 321 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 163 321 - -
Viun6g01997 321 Pfam Putative GTPase activating protein for Arf 10 125 IPR001164 GO:0005096
Viun6g01997 321 ProSiteProfiles C2 domain profile. 146 262 IPR000008 -
Viun6g01997 321 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 308 IPR035892 -
Viun6g01997 321 FunFam Arf-GAP with dual PH domain-containing protein 1 5 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01997 Viun-Chr6 26549521 26556212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01997 4 321 C2H2 Transcription Factor Family AT4G21160 71.733 4.70e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01997 K12486 - gmx:100810806 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01997 6 26549521 26556212 Viun6g01997 6 26549521 26556212 ECH