Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01996 ATGGAACATGGAAGACCTGCAAGTAGAAAAAAATTGAGAGATTTATTGCTTAAAAAAGAAAATCGTTGTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTCGGTACTCATATATCAAAGGTTTTGTCTGTGGCATTGGATGACTGGTCAGAGGATGAAATAGATGCAATGATAGAGGTTGGGGGAAATGCTTCTGCTAATTCAATATATGAAGCTAATATTCCTGAAGGAGTTACAAAACCCGGACCAGATGCTGATCATGAGCAGCGTTCGAACTTCATAAGGTCAAAATATGAATTTCAAGAATTTCTGAAACCGAGTTTGCGCATTATATCTGGAAAAGGCAGTCTAGAATCAAGTTCTACAAAAAGTGCTAAGGATAGTTTTAGAAGTACTAGTACAGAGAGAAAGGAAGGTATGGTAGAATTTATTGGACTGTTGAAAGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGGGATATAAAGTCAAGTGATCCGTATGTCATTTTGAGCCTTGGCCAGCAGAAAGTATTTGATCATGACACATTTTCCGCTGATGATATTATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTTATTGAGGATAGCACAGTCCATATTACTGAGGGTAAGGTTAAACAAATGATGTCACTAAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAG 870 0.3816 MEHGRPASRKKLRDLLLKKENRCCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVALDDWSEDEIDAMIEVGGNASANSIYEANIPEGVTKPGPDADHEQRSNFIRSKYEFQEFLKPSLRIISGKGSLESSSTKSAKDSFRSTSTERKEGMVEFIGLLKVKVIKGTNLAIRDIKSSDPYVILSLGQQKVFDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVHITEGKVKQMMSLKLQNVESGELDLELEWIPLDQ 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01996 289 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Viun6g01996 289 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 163 286 IPR035892 -
Viun6g01996 289 Gene3D C2 domain 197 289 IPR035892 -
Viun6g01996 289 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 7 198 IPR044518 GO:0005096|GO:0005543
Viun6g01996 289 SUPERFAMILY ArfGap/RecO-like zinc finger 9 126 IPR037278 -
Viun6g01996 289 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 123 IPR001164 GO:0005096
Viun6g01996 289 CDD ArfGap 20 118 - -
Viun6g01996 289 Pfam Putative GTPase activating protein for Arf 10 125 IPR001164 GO:0005096
Viun6g01996 289 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Viun6g01996 289 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Viun6g01996 289 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Viun6g01996 289 SMART arf_gap_3 9 131 IPR001164 GO:0005096
Viun6g01996 289 Pfam C2 domain 165 197 IPR000008 -
Viun6g01996 289 FunFam Arf-GAP with dual PH domain-containing protein 1 5 132 - -
Viun6g01996 289 Gene3D C2 domain 148 196 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01996 Viun-Chr6 26549516 26556212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01996 4 289 C2H2 Transcription Factor Family AT4G21160 65.350 1.55e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01996 K12486 - gmx:100810806 484.567