Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01990 ATGAAGTCATTTAGCTTTTTAGTGTTGTTATCTTTGTATTTCTTCTCCGTGGTGGGGCAGCTTCCTTCTCAGGATATTTTAGCATTGCTGGAGTTCAAGAAAGGCATCAAACACGACCCCAGTGGCTATGTGCTCAATTCCTGGAATGAGGAATCCATTGATTTTGATGGATGCCCTTCTTCATGGAATGGAGTTTTGTGCAATGGTGGTAATGTTGCTGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACACAGACTTGAGTGCGTTTTCAAATCTCACTAAGCTTGTGAAACTCTCCATGTCCAACAATTCCATAACAGGAAATCTACATGGCAGCATTGCTGAGTTCAAAAGCCTTGAATTCCTGGATATTTCCAATAACCTCTTTTCTTCATCTTTGCCATTGGAAATTGGTAAAGTAAGCAGTTTGCAGAATCTGTCTTTGGCTGGAAATAATTTCTCCGGTCCAATTCCCGATTCAATGTCAGAAATGGCTTCCATGAAGTCCCTGGATTTGAGCCGCAACTCTTTCTCTGGAAAGCTGCCAGTGTCGTTGACTAAGGTGACCAGCCTTGTATCGCTTAACTTGTCCCATAACAGCTTCACTGGAAAAATTCCCAAAGGTTTTGAGCTGATTCCTGCTCTTGAAAAGCTTGACTTGCATGGTAATATGCTTGAAGGTAATTTGGATGTTGATTTTATGCTTTTCTCGAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCTAGTTCTGATTCCAAGCAGAAGTTTCTACCGCGACTATCTGAAAGTATTAAGCATCTGAATTTAAGCCACAACCAGCTTACTGGATCATTGGCCAGTGGAGTTGCAGAACCGGTTTTTGAAAACTTGAAAGTGTTAGACCTCAGTTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTCTATGATCTTCAGGTCCTCAGGCTTAGTAACAACAGGTTTTCAGGATTTATTCCTAATGGCCTACTGAAAGGAGACTCTTTGGTTTTAACTGAACTGGATTTGAGTGCCAACAATCTCTCTGGGCCACTAAGTATAATTACATCAACAACACTTCACTCTCTTAACCTCTCATCAAATCAGTTCACTGGCGAACTACCACTGCTGACTGGAAGCTGTGCTGTACTTGATCTGTCAAACAACAAATTAGAGGGAAATTTAACTAGGATTTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGCAATCATTTGATCGGAACCATTCCAGAGGAAACTCCTCAATTTTTGCGTCTAAATTATTTGAATTTATCCCATAATTCTCTCAGCAGCTCCCTTCCAAAAGTCTTGACACAGTATCCAAAGCTGATAGTGCTTGACATTAGTTTCAACCAATTAGATGGACGGTTTCTATCCGGTCTGCTCACAATGCCCTCTTTGCAAGAGCTGCATCTTGAAAATAATGTGATCTCTGGTGGCATCAATTTCTCATCTTCTCCTGACCAATCCGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTAATGGCTATTTTCCTGATGAGTTTGGGTCATTAACTGGCCTTAAAGTGCTAAATATTGCTGGAAATAATTTTTCTGGCTCTCTTCCAACCACCATTGCTGACATGAATTCACTTGACTCAATGGATATATCAGATAATCATTTTACTGGCCCTCTACCAAATAACATGCCAAAGGGGCTCCAAAACTTCAATGCTTCCGGAAATGATCTATCTGGACTCGTCCCAGAAGTTTTTAGGAAGTTTCCTAGTTCTTCTTTCTTTCCTGGTAATTCTAAGTTACATTTTCCAAATGGTCCTCCAGGATCAACTGCTTCACCTGCTGAAAGTTCCAAGAAGAAGCATTTGAACACCATTGTTAAAGTAATAATCATAGTGTCATGTGTGGTTGCGTTCTTCATATTAATCCTGCTCGCAGTCTTCATACACTATATACGTATATCAAGATCTCCACCAGAATATGATACAAGTAAGGATATCCACAGGCATCCTCAACCAATTATCTCGGCTCCTGTTCGAACTACTGATAGGGGTGGTGCTTTGGTTGTTTCAGCCGAGGACCTTGTGGCCACACGCAAAGAGTCGCCATCAGAGGTAATCAGCTCTGATGAAAAAATGGCAGCTGTAACGGGGTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCATTCACCGGTGAAAATCTTGCAAGACTAGACACGAGGTCACCGGATCGGTTGATTGGAGAGCTGCATTTTCTTGATGATTCGATAACATTGACACCTGAGGAGCTCTCAAGAGCCCCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCCTACAAGGCCACTCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTAGCAAAACAGAGAAAAGAATTTGTCAAGGAAACCAAAAAATTTGCGAACATCAGACATCCAAATGTTGTGGGATTGAGAGGCTATTATTGGGGCCCTACACAGCACGAGAAGCTCATCCTTTCAGATTACATCTCACCAGGAAGTCTTGCAAGCTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCTTTAACTTGGATGCAGAGACTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCATCCCTCATGGGAACCTCAAAGCCACAAATGTGTTGTTAGACACAACTGATATGAATGCACGAGTCGCCGATTACTGTCTTCACCGGCTCATGACTCAAGCAGGTACTATCGAACAGATTCTTGATGCCGGTGTCTTAGGTTATCGTGCACCGGAGTTAGCTGCCTCGAAGAAGCCAATGCCCTCCTTCAAGTCAGATGTTTATGCTTTTGGAGTGATACTTTTGGAACTTCTAACCGGAAGGTGTGCTGGTGATGTGATATCTAGTGAGGAGGGAGGTGTTGATCTCACAGATTGGGTGAGGTTGCGTGTGGCAGAAGGTAGAGGCTCAGAATGTTTTGATGCTACCTTGATGCCAGAAATGAGTAATCCTGTTGTAGAAAAGGGAATGAAGGAGGTCCTGGGAATAGCCATGCGATGCATTCGATCAGTTTCTGAAAGGCCTGGCATCAAAACTATATATGAAGATCTCTCTTCTATATAG 3192 0.4236 MKSFSFLVLLSLYFFSVVGQLPSQDILALLEFKKGIKHDPSGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSAFSNLTKLVKLSMSNNSITGNLHGSIAEFKSLEFLDISNNLFSSSLPLEIGKVSSLQNLSLAGNNFSGPIPDSMSEMASMKSLDLSRNSFSGKLPVSLTKVTSLVSLNLSHNSFTGKIPKGFELIPALEKLDLHGNMLEGNLDVDFMLFSSASYVDLSENMLSSSDSKQKFLPRLSESIKHLNLSHNQLTGSLASGVAEPVFENLKVLDLSYNQLDGELPGFDFVYDLQVLRLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHSLNLSSNQFTGELPLLTGSCAVLDLSNNKLEGNLTRILKWGNIEFLDLSGNHLIGTIPEETPQFLRLNYLNLSHNSLSSSLPKVLTQYPKLIVLDISFNQLDGRFLSGLLTMPSLQELHLENNVISGGINFSSSPDQSDLQILDLSHNQLNGYFPDEFGSLTGLKVLNIAGNNFSGSLPTTIADMNSLDSMDISDNHFTGPLPNNMPKGLQNFNASGNDLSGLVPEVFRKFPSSSFFPGNSKLHFPNGPPGSTASPAESSKKKHLNTIVKVIIIVSCVVAFFILILLAVFIHYIRISRSPPEYDTSKDIHRHPQPIISAPVRTTDRGGALVVSAEDLVATRKESPSEVISSDEKMAAVTGFSPSKQSHFSWSPESGDSFTGENLARLDTRSPDRLIGELHFLDDSITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWMQRLKIAVDVARGLNYLHFDRAIPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLRVAEGRGSECFDATLMPEMSNPVVEKGMKEVLGIAMRCIRSVSERPGIKTIYEDLSSI 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01990 1063 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 356 614 - -
Viun6g01990 1063 Gene3D Transferase(Phosphotransferase) domain 1 860 1063 - -
Viun6g01990 1063 ProSiteProfiles Protein kinase domain profile. 781 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01990 1063 Gene3D Ribonuclease Inhibitor 185 258 IPR032675 -
Viun6g01990 1063 ProSiteProfiles Leucine-rich repeat profile. 293 315 IPR001611 GO:0005515
Viun6g01990 1063 Pfam Protein tyrosine and serine/threonine kinase 785 983 IPR001245 GO:0004672|GO:0006468
Viun6g01990 1063 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 21 265 - -
Viun6g01990 1063 SUPERFAMILY L domain-like 41 380 - -
Viun6g01990 1063 Gene3D Phosphorylase Kinase; domain 1 774 858 - -
Viun6g01990 1063 Pfam Leucine Rich repeat 267 280 IPR001611 GO:0005515
Viun6g01990 1063 Pfam Leucine Rich repeat 362 378 IPR001611 GO:0005515
Viun6g01990 1063 Pfam Leucine Rich repeat 293 307 IPR001611 GO:0005515
Viun6g01990 1063 SUPERFAMILY L domain-like 343 597 - -
Viun6g01990 1063 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Viun6g01990 1063 FunFam Pollen receptor-like kinase 1 859 1063 - -
Viun6g01990 1063 SUPERFAMILY Protein kinase-like (PK-like) 784 1060 IPR011009 -
Viun6g01990 1063 FunFam Leucine-rich repeat receptor-like protein kinase 766 858 - -
Viun6g01990 1063 Gene3D Ribonuclease Inhibitor 259 628 IPR032675 -
Viun6g01990 1063 PANTHER OS07G0626500 PROTEIN 9 1063 - -
Viun6g01990 1063 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515
Viun6g01990 1063 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Viun6g01990 1063 Pfam Leucine rich repeat N-terminal domain 23 68 IPR013210 -
Viun6g01990 1063 SMART LRR_typ_2 190 213 IPR003591 -
Viun6g01990 1063 SMART LRR_typ_2 478 507 IPR003591 -
Viun6g01990 1063 SMART LRR_typ_2 291 313 IPR003591 -
Viun6g01990 1063 SMART LRR_typ_2 527 550 IPR003591 -
Viun6g01990 1063 SMART LRR_typ_2 430 453 IPR003591 -
Viun6g01990 1063 SMART LRR_typ_2 118 142 IPR003591 -
Viun6g01990 1063 SMART LRR_typ_2 94 117 IPR003591 -
Viun6g01990 1063 SMART LRR_typ_2 314 338 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01990 Viun-Chr6 26497138 26501871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01990 29 572 Receptor kinase-like Gene Family AT1G55610 30.783 4.55e-45 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun6g01990 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01990 - - gmx:100793639 1918.66