Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01972 ATGGATTTTTCTATGGGAGCTGCAGGTGGTTCTGGAGATGATAAACACAATCACAATCACAAAAACAGTCACAATAAGAGCTCAAACAAAGGGAAAAAGGCTTACCATGGCCACAACTCTGATAGAACATCTAAGCTCGAAGAAATGTTTCGCAAATGTCCACATCCAACTAAAAGCACAAGATGTCAAATAGCAGAAGAACTTGGACTCGAGCCAAAACAAGTAAAATTTTGGTTTCAAAATAAGAGAACTCAAATAAAGACTCAAACTGAACGAACAAATAACAGTATATTTCGTATTGAGAATGAAAAGATACGTAAAGATAACCTCTTATTAAGAGAGGCATTCAAAAATATAATTTGTCCATCTTGTGGAGGTTCATCAAATGTTGATGAAAAGCGTAAACGTTCTCTGGAACAACTTCGTCTTGAGAATGCTTGTCTGAGAGAAGAGCATGAGAGGGTGTCTAGTGCTCTTGCAAAGTACATGGGTAAACCAGGATTAGACCTAAACATGAACTCCACTCTTATGAGGGGATCTTCATCACGTGGTCCATTAATACCAAGAAGTTATCTGAAACTAAGTGCTCCATTTCAAGGTGAAGATACCATGTTCAACCCTGGGAGCAGAATAACACAAATGGAAAAAACAATGATGTCAAAAACTGCAGTGGCTGCTAAGGAAGAATTAATTAGACTTATGTGCACCAATGAACCCATATGGGTCAAATCTTCAAACCATCAAAGTTTTGTTCTTCATCTTGAAAGCTACGAAGCATTCTTTCCAAGGATTAATCACTTCAAGAATTCCCAAGCTCGTGTAGAATCCTCAAAACATTCACGACTTGTGAGAATTCAGGCAATGGAATTAGTTGAGATGTTTCTGAATTCGGAAAATTGGGCAAATCTTTTCTCAACAATTGTTAGAAAAGCACGCACAATCGAAGTACTTGCAAATGGTTCAAACCGAAGCGGAGTTTTGTTGTTGATGAGCGAAGAGATGCATGTTCTTTCACCTTTAGTTCCATCTCGGGAATTGTGCTTCCTTCGTTATTGTGAACAACTTGAAGAACGTTCGTGGGTGATAGTGGATGTTTCGGTTGACAGCACCAACGGGAACAACAATCCTAAGTATTGGAGGTGCCCCTCTGGATGCATGATTCATGAAGTTTCAAATGAGTTGTGCTGGATTTCTTGGATTGAACATGTAGAAGTGGATGAGAGGATTGAAACGCATCAACTATACAAAGATATCGTTAATAACAACATTGCGTACGGAGCAGAAAGATGGCTTTTGGAACTTCAAAGAATGTGTGCAAAATTTACAAGTGTTGGAGATGAAAACATGCCTGATTATGACATCAATGGAGTGATCCCTATTCTCGGAGGAAGGAAAAATATGATAAAGTTTTCTCATCAAATGGTAAAAAACTTCTATGGAGTTTTAAGCATGTCAAGTAAGCCAGAGTACCTTGAACATTTAGCTGAGGAGAATAACAATAACAATATTAGGATCGTTGTTCGTAAATACACAAACCCAAGTCAATCAAATGCCATGATTATATTCATTGCTACGACTTCTTTTCGACTACCATTGCCCTCAGAATACGTTTTTGACTTCTTTAGAGATCCAATAAAACGTGCTAAGTGGGACGTTATGTGTTATGAGAGTCCCGTGCATGAAGTTGCACGTGTCTCAGCTGGAACTAACCCTAGCAACTACATATCAATTATACAGCCTCTTCATGGAACTACGAATAATATGGGCATTATTCAGGAGAGTTGTATTGATGATTTGGGATCATATGTTGTGTATTCCCCAGTGAATGTATCTGACATAAAAAGGACTATAAATGGTGAAATGTCCATTTTTCCATCTGGCATTGTGATCTCGAAGGATGTTCAATCTATTACAAATGCTTCTGCATGGAGTAGTGAAAGTGGTGGTTCCAGAACACACAGTACTTTATTGACGGTGGCTTTTCAAATACTGATGAATGGTCCAACAACTATGGTAGCAGAATCCAAGACCGTTGTTAACTCTCTCATGACCTCAACAATACAGAATATAAACTATGCTTTGATGAATGGTTCTAATTTAGAGTTGTAG 2109 0.3817 MDFSMGAAGGSGDDKHNHNHKNSHNKSSNKGKKAYHGHNSDRTSKLEEMFRKCPHPTKSTRCQIAEELGLEPKQVKFWFQNKRTQIKTQTERTNNSIFRIENEKIRKDNLLLREAFKNIICPSCGGSSNVDEKRKRSLEQLRLENACLREEHERVSSALAKYMGKPGLDLNMNSTLMRGSSSRGPLIPRSYLKLSAPFQGEDTMFNPGSRITQMEKTMMSKTAVAAKEELIRLMCTNEPIWVKSSNHQSFVLHLESYEAFFPRINHFKNSQARVESSKHSRLVRIQAMELVEMFLNSENWANLFSTIVRKARTIEVLANGSNRSGVLLLMSEEMHVLSPLVPSRELCFLRYCEQLEERSWVIVDVSVDSTNGNNNPKYWRCPSGCMIHEVSNELCWISWIEHVEVDERIETHQLYKDIVNNNIAYGAERWLLELQRMCAKFTSVGDENMPDYDINGVIPILGGRKNMIKFSHQMVKNFYGVLSMSSKPEYLEHLAEENNNNNIRIVVRKYTNPSQSNAMIIFIATTSFRLPLPSEYVFDFFRDPIKRAKWDVMCYESPVHEVARVSAGTNPSNYISIIQPLHGTTNNMGIIQESCIDDLGSYVVYSPVNVSDIKRTINGEMSIFPSGIVISKDVQSITNASAWSSESGGSRTHSTLLTVAFQILMNGPTTMVAESKTVVNSLMTSTIQNINYALMNGSNLEL 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01972 702 SMART HOX_1 30 93 IPR001356 GO:0003677
Viun6g01972 702 SUPERFAMILY Homeodomain-like 24 93 IPR009057 -
Viun6g01972 702 SMART START_1 221 440 IPR002913 GO:0008289
Viun6g01972 702 Gene3D - 15 102 - -
Viun6g01972 702 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Viun6g01972 702 Pfam START domain 224 440 IPR002913 GO:0008289
Viun6g01972 702 Gene3D - 228 440 IPR023393 -
Viun6g01972 702 MobiDBLite consensus disorder prediction 1 44 - -
Viun6g01972 702 CDD homeodomain 32 89 IPR001356 GO:0003677
Viun6g01972 702 ProSiteProfiles START domain profile. 212 443 IPR002913 GO:0008289
Viun6g01972 702 SUPERFAMILY Bet v1-like 213 441 - -
Viun6g01972 702 Pfam Homeodomain 36 87 IPR001356 GO:0003677
Viun6g01972 702 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Viun6g01972 702 Coils Coil 138 158 - -
Viun6g01972 702 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 28 694 IPR042160 -
Viun6g01972 702 SUPERFAMILY Bet v1-like 464 689 - -
Viun6g01972 702 CDD START_ArGLABRA2_like 216 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01972 Viun-Chr6 26404544 26410491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01972 28 694 Homeobox Transcription Factor Family AT1G73360 38.627 6.81e-162 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun6g01972 START 3e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01972 K09338 - gmx:100794552 853.973