Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01971 ATGGATTCTTCCATGGCAAGTGCTGGTGCTTCTGCTGATGAAGGTTCTCAAAACCATAACAATGGAAGGAAAACCTCGTACAAACGTCTTACTTCTTCTCAAACATCGAGACTTGAAAGGTTCATCAAGGATTGCCCACACCCTGATGAGGCGCAACGACGTCAATTGGCTATTGAGATTGGACTTGAGCCAAGGCAAATAAAGTTCTGGTTTCAGAATAAGAGGACCCAAATCAAGAATCAACACGAGAGAGCAGATAACACTGCTCTTCGAGTTGAGAATGATAGGATACACACAGAAAATGTTACCATGCAAGAGGCTTTGAAGAGTATGCTTTGTCCATCTTGTGGAGGACCACCGTGTCTTGAAGGAGATCGTGAACATGCTATCCATAATATGAAACTTGAAAATATGCACCTAAAGGAAGAGCATGAGAAGGTGTCTCGTCTTCTTTCGAGGTACTTGGAGAGCCAGATGTTACCACCTGATCAGTTCCAACAGGGTTTTTTTCCCATCATAGGATCAAGTTCAAATGCTGTAGCACATGGAAATCCACTGAACCAATCGATTGGTGGAAGTTCAAGTCATGATCCAAATCTTGCTTTGCATATGATGGATGCTGGCCATAACTTATTTGCAAGTGAAAGCATAGAAAAAAACCTTATGAATAAGGTTGCTGCTTCCGCCATGGATGAGTTAGTTAGGCTTCTTCGGATTAATGAGCCCTTTTGGATTAAGTCTTCATCTCAAGATGGCAAGCTCTGTCTGCTGCTTGAAAACTATCAAAAAATGTTCCCAAAGACCAAACATTTCAAAGGGCCAAACGTGCGTATTGAAGCAACAAAAGAATCAGGAATAGTCAACATTAATACCCTTCAGCTTGTTGACATGTTTCTAGATTCGAACAAATGGGTGAATCTGTTCCCAACAATTGTCTCAAAAGCAGAAACAGTGAAAGTAATTGAAAGAGGTTTGCCAGGAAACCGAAGTGGAGCCTTGCAGCTGATGTTCGAGCAAATGCATGTTCTTTCACCCTTTGTGCAACCTCGTGAATTTCAAATCCTTCGTTTCTGTCAACAAATTGAAGAGGGCCTGGTGATAGCAGATGTATCATTTGATTCCTTCCAGCAAAAACCCTCTTTTTTTCAGTCTTGGAAACATCCCTCTGGATGCTTGATCCAGGAACTGCCTAATGGGTGCTCCATGATTACTTGGGTTGAGCATGTGGAGGTGGATGATAAAATCCAAACACATCCACTGTACAAAGATATTATTGCTAAGGGCACTGCATACGGAGCTGAAAGGTGGATTATGGAACTTCAAAGAATCTGCGAGAGATTTGCTGCCTTTTATGTTGAAAAGATACCTGATCATGACTCTGCAGGAGTGATCAATTCTCTTGAGGGGAGGCGAAGTATAATGAATTTTTCTCATCGTATGCTGAAAATCTTCTGTGATAGTATAACCATGGCAGATGGGTTGGACTTTCCACTATGTGATCTGATGAACACTAGTGGGGTGAGGGTCTCTATTCGCGAAAGCAAAATCATTGGACAGCCAAGTGGCATGATTGTTGCAGCTGCTACCTCCATTTGGCTTCCTCTCCATTATATGAAACTCTTTGACTTCTTCTTAGACGATAAAAACCGTGCTCAGTGGGATGTTCTTACCTGTGGAAATCAGGCACACAAGGTTGCAAACATCTCAAATGGAATTCACCCTGGGAACTGTGTGTCGATAATTCGGCCATTCATCCCTAGCGAGAACAATGCACTGATTCTTCAAGAGAGTTTCACAAGCCCGATGGGATCGTATGTTATATATGCTCCAACGGATGTAGCAACCATGACTGCGGCGATAATGGGAGAAAACTCTTCGATGTTACCAGTTCTTCCATCAGGTTTTGTGATCTGTCCAGATGGTGAACCAAATGGAGGTATGGGAGTATTCGATGGTTCAGATAGTGAAAGAATGGGAGGGTCATTGCTCACTGTGGCATTTCAAATACTAGCTAGTGCTGATGGACGCAATATGCCAAATAGAAAAGCTGGAGCAGCTGTCAACTCTCTTTTAACCTCAACTATTCTCAGAGTTAAGGATGCTCTCAACTGCAACAACTTGGACTGA 2127 0.4255 MDSSMASAGASADEGSQNHNNGRKTSYKRLTSSQTSRLERFIKDCPHPDEAQRRQLAIEIGLEPRQIKFWFQNKRTQIKNQHERADNTALRVENDRIHTENVTMQEALKSMLCPSCGGPPCLEGDREHAIHNMKLENMHLKEEHEKVSRLLSRYLESQMLPPDQFQQGFFPIIGSSSNAVAHGNPLNQSIGGSSSHDPNLALHMMDAGHNLFASESIEKNLMNKVAASAMDELVRLLRINEPFWIKSSSQDGKLCLLLENYQKMFPKTKHFKGPNVRIEATKESGIVNINTLQLVDMFLDSNKWVNLFPTIVSKAETVKVIERGLPGNRSGALQLMFEQMHVLSPFVQPREFQILRFCQQIEEGLVIADVSFDSFQQKPSFFQSWKHPSGCLIQELPNGCSMITWVEHVEVDDKIQTHPLYKDIIAKGTAYGAERWIMELQRICERFAAFYVEKIPDHDSAGVINSLEGRRSIMNFSHRMLKIFCDSITMADGLDFPLCDLMNTSGVRVSIRESKIIGQPSGMIVAAATSIWLPLHYMKLFDFFLDDKNRAQWDVLTCGNQAHKVANISNGIHPGNCVSIIRPFIPSENNALILQESFTSPMGSYVIYAPTDVATMTAAIMGENSSMLPVLPSGFVICPDGEPNGGMGVFDGSDSERMGGSLLTVAFQILASADGRNMPNRKAGAAVNSLLTSTILRVKDALNCNNLD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01971 708 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Viun6g01971 708 Pfam START domain 225 446 IPR002913 GO:0008289
Viun6g01971 708 SMART START_1 224 446 IPR002913 GO:0008289
Viun6g01971 708 Gene3D - 10 95 - -
Viun6g01971 708 SUPERFAMILY Homeodomain-like 16 85 IPR009057 -
Viun6g01971 708 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Viun6g01971 708 CDD START_ArGLABRA2_like 219 445 - -
Viun6g01971 708 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Viun6g01971 708 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Viun6g01971 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 703 IPR042160 -
Viun6g01971 708 MobiDBLite consensus disorder prediction 1 33 - -
Viun6g01971 708 SUPERFAMILY Bet v1-like 478 699 - -
Viun6g01971 708 Gene3D - 222 441 IPR023393 -
Viun6g01971 708 ProSiteProfiles START domain profile. 215 449 IPR002913 GO:0008289
Viun6g01971 708 SMART HOX_1 23 85 IPR001356 GO:0003677
Viun6g01971 708 SUPERFAMILY Bet v1-like 217 448 - -
Viun6g01971 708 CDD homeodomain 29 82 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01971 Viun-Chr6 26370388 26376108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01971 23 703 Homeobox Transcription Factor Family AT1G73360 42.399 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun6g01971 START 1.7e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01971 K09338 - gmx:100795075 1043.11