Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01954 TTCAACGGACCCATATTTATAATTACTCGTTCAAAACGACCCACATTTACAAAAAAACCGCCATATTCAGGACTGCCAGATTCTACAGAAGGGCATATTATAGCAAAACCTGGGTGTAGTTTCAGATGTGGAGGTGTTGACATCTCTTACCCTTTTGGAATGAAAGATCCCAAATGCTACCTTGACAAGTGGTTTGAAGTAGAATGCAGAGAAACTTCCGACGGTCAAAAACCCTACCTAAAGTCTTTAAATCTGGAGGTCATAGCCGTTGCCTTGCATAGGGTTTATATCATGAATCCAATCTTCCATTGGAACTGCCCAAGAAGAAAAGTGAAGGCAGAAGTAATAAACCTGAGAGGAAGCCCTTTTGTGTATTCCCATAAATTCAATAGGTTTGTGGGCGTTGGTTGCAACAACCTTGCATTTTTGCAGTCCAATGGGTCCATTGTTGCGTGTTGTGTGTCCATTTGTGATGACACAGATGAAGTCAACGATAACTTCAACTTGGTAAGAGGAGATAGTTGCAGTGGCAGGTACTGCTGTGAGACTTTACTGCCCAAGTATCTTTCAGAATATAACGCAACACTTGAAGATTTTAACATCGAAAACAATAATACAGCGAGTGAACGGTGTAGTTATGCGTTCATCGGATATCTATACTCGTACCGGCAAGATGCGTATAGGCTTAATAGGGATTATACTCCTGCAATGCTTGAGTGGGAGATTTTGGACCACATGCTTGACAATTCTACCCATCAACTCCTTTCAGAATCAGATTTGTTAGATTATGTCACTTGTAATCGCTCTAATAATGTTGGATCTTCGCAAAACACAAGCTCTGGTTGGAGATGCGACTGCTTAGAAGGCTTCTATGGCAATCCCTACGTTTCAGGAGGCTGCACTGCCATCCCAGGTTATTACAATCACAGTCAAACGAAGAAGTGGGCTATAGTAGGAGTTTCCTCAAGTCTGGGATCTGTGATTTTTCTCGTTGGTCTATGGTTGTTGTATAAGGTTGTAAGGAAGAGAGTGATAGAGAAACGTAAACAGAAGTTCTTCAAAAAGAATGGCGGTTTGTTGTTGCAACAAAGAATGTCATCCAATGAAGCTAATGTAGACAAAAGTTTTCACTTTAGCTTAGACGATTTAGAGAAAGCCACTGACAACTTTAACATGGATAGAATTGTTGGAAAGGGAGGGCAAGGTACCGTTTACAAAGGAATGCTAGTAGATGGTAGAATTGTTGCAGTTAAAAAGTTTAAGGTGGAAGGAAATGTCGAAGAGTTCATCAATGAGTTTGTCATTCTCTCACAAATCAACAATAGAAATGTGGTTAGGTTACTAGGATGTTGTTTGGAGACAGAAATTCCTCTACTTGTGTACGAATTCATTCCTAATGGTAATCTCTTTGAGTATTTGCATGACCAGAACAAGGAGTTGTTACCAATGACATGGGAGATGTGTTTGAGAATTGCCACTGAAATTGCAGGAGCTCTATTTTACCTGCATTCAGTTGCATCTAAACCCATTTATCATAGAGATATCAAATCCACAAATATACTATTGGATGAAAAGTATAGGGCAAAAATTGCAGATTTTGGAACATCCAGGGTAATTTCTGTTGAAGCTACTCATCTTACAACAGTTGTTCAAGGTACTTTTGGTTATTTGGATCCTGAATATTTTCACACCAGTCAATTTACAGAGAAAAGTGATGTGTACAGTTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGACAAAAACCAATATCACCAACGACTTCTGGAGAGTTCAAGAGTTTAGCATCATATTTTGTTGAGTGTCTGGAGGAGGACAATCTGTTTGAGATTATTGACAAAAGAGTTGTGAAAGAAGCAGAGAAGGGAGAGATCATTGCTGTTGCTAATCTTGCAAGTAGATGCTTAGAGTTGAAAGGAAAGAAACGTCCAACTATGAAAGAGATCACGTTTGAATTAGAAGGGATTCATGGATTGGTTAGTAAAAGTAATGCAGAGAAAAAAGGTGACGAAGTTGAGGTTGCACGAGTTCTAGATTGGCATCCTTGGGATGGATATTCTACGTCAAATTCATGGGACTCCAAGGTTATACCTACGGTATAG 2121 0.3942 FNGPIFIITRSKRPTFTKKPPYSGLPDSTEGHIIAKPGCSFRCGGVDISYPFGMKDPKCYLDKWFEVECRETSDGQKPYLKSLNLEVIAVALHRVYIMNPIFHWNCPRRKVKAEVINLRGSPFVYSHKFNRFVGVGCNNLAFLQSNGSIVACCVSICDDTDEVNDNFNLVRGDSCSGRYCCETLLPKYLSEYNATLEDFNIENNNTASERCSYAFIGYLYSYRQDAYRLNRDYTPAMLEWEILDHMLDNSTHQLLSESDLLDYVTCNRSNNVGSSQNTSSGWRCDCLEGFYGNPYVSGGCTAIPGYYNHSQTKKWAIVGVSSSLGSVIFLVGLWLLYKVVRKRVIEKRKQKFFKKNGGLLLQQRMSSNEANVDKSFHFSLDDLEKATDNFNMDRIVGKGGQGTVYKGMLVDGRIVAVKKFKVEGNVEEFINEFVILSQINNRNVVRLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNKELLPMTWEMCLRIATEIAGALFYLHSVASKPIYHRDIKSTNILLDEKYRAKIADFGTSRVISVEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKPISPTTSGEFKSLASYFVECLEEDNLFEIIDKRVVKEAEKGEIIAVANLASRCLELKGKKRPTMKEITFELEGIHGLVSKSNAEKKGDEVEVARVLDWHPWDGYSTSNSWDSKVIPTV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01954 706 SUPERFAMILY Protein kinase-like (PK-like) 369 659 IPR011009 -
Viun6g01954 706 CDD STKc_IRAK 396 662 - -
Viun6g01954 706 Gene3D Phosphorylase Kinase; domain 1 355 463 - -
Viun6g01954 706 FunFam Wall-associated receptor kinase 2 360 463 - -
Viun6g01954 706 FunFam Wall-associated receptor kinase 2 464 682 - -
Viun6g01954 706 SMART serkin_6 390 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01954 706 Pfam Protein tyrosine and serine/threonine kinase 391 658 IPR001245 GO:0004672|GO:0006468
Viun6g01954 706 Pfam Wall-associated receptor kinase galacturonan-binding 39 87 IPR025287 GO:0030247
Viun6g01954 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Viun6g01954 706 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 667 IPR045274 GO:0007166
Viun6g01954 706 ProSiteProfiles Protein kinase domain profile. 390 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01954 706 Gene3D Transferase(Phosphotransferase) domain 1 464 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01954 Viun-Chr6 26269302 26276867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01954 39 662 Receptor kinase-like Gene Family AT1G69730 44.223 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun6g01954 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01954 - - gmx:100798794 941.028