Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01953 ATGATGCTGCAACTACCATCTCTCATCATCGTCATCATGTTGATAACATTGCCAATGTATGCACTGCCATATTCTTCACAAGAGAATATCATAGCAAAACCTGGTTGTAGTTCCAGATGTGGAGGTGTTGACATCTCTTACCCCTTTGGAATGAAAGATCCCAAATGCTACGCAGGCAAGTGGTTTGAAGTAGAATGCAGAGAAACTTCTAACGGTCAAAAACCCTTCATAAAGTCTTTAAATCTGGAGGTGATGGCCATCAGCATGAATTGGGTATATATCATGAATCCAATTTTCCGTTGGAACTGCCCAAGCAGAAGAGCGAAGCCCGAAGTAATAAACCTGAGAGGAAGCCCTTTCGTGTATTCCCAGAAATTCAACAGATTTGTGTCCCTTGGTTGCAACAACCTAGCTGTTCTGCACTCGAATGGGTCCAATGTTGCTTGTTGTGTGTCCATTTGTGATAACAGCGATGAAGTCAACAATTACTTCGACTTCCAAAGAGAAGATAGTTGCAGTGGCAGGTACTGCTGTGATACCTCACTGCCCAAGTATCTGTTAGAATATAACGCAACACTTCACGATTTTAACACAGAAAACAATAATACTGTGAGTCAACGGTGTAGTTATGCGTTTATTACACATTACTCGTACCGGCTATATGATTATGGGCTTAACGATAAGGATTATATTCCTGCAATGCTTGAGTGGGAGATATTAGACAACACGCTTGACAATTCCACCCATCAATTCCCTTCAGAATCAGATTATGCCACTTGTAGTCGCTCTAATGTTGGATCTTCGCAAAACACAAGCTCTGCTTGGAGATGCAATTGCTTAAATGGCTTCTATGGCAACCCCTACGTTGCAGGAGGCTGCACTGCCATCCCAGGTTATTACAATCACAGTCAAGCGAAGAAGTGGGCTATAGTAGGAGTTTCGTCAAGTCTGGGATCTGTGATTTTTCTCCTTGGTCTATGGTTGTTGTATAAGGTTGTAAGGAAAAGAGTGATAGAGAAACGTAAACAGAAGTTCTTCAAAAAGAATGGAGGTTTGTTGTTGCAACAAAGAATGTCATCTAATGAAGCTAATGTAGACCAAGCTATTCTCTTTAGCTTGGATGATTTAGAGAAAGCCACTAACAACTTTAATATGGATAGAGTTGTTGGAAAGGGAGGGCAAGGTACTGTTTACAAAGGAATGCTAGTAGATGGCAGAATTGTTGCAGTGAAAAAGTTTAAGGTGGAAGGAAATGTTGAAGAGTTCATCAATGAGTTTGTCATTCTCTCACAAATCAACAACAGAAATGTGGTCAGATTGTTAGGATGTTGTTTGGAGACAGAAATTCCCCTGCTTGTTTATGAATTCATTCCAAATGGTAATCTCTTTGAGTATTTGCATGACCAGAAGAAGGAGTTATTACCAATGACATGGGAGATGTGTTTGAGAATTGCCACTGAAATTGCAGGAGCTCTGTTTTACTTGCACTCAGTTGCATCTAAACCCATTTATCACAGAGATATCAAATCCACAAATATACTGTTGGATGAAAAGTATAGGGCAAAAATTGCAGATTTTGGAACATCCCGGGTAATTTCTGTTGATGCTACTCATCTTACTACAGTTGTTCAAGGTACCTTTGGGTATTTGGATCCTGAATATTTTCACACAAGTCAATTTACAGAAAAAAGCGATGTGTACAGTTTTGGAGTAGTTCTTGCCGAACTTTTAACAGGCCAAAAACCAATATCACCAGCGAGTTCTGGAGAGTTCAAGAGTTTAGCATCATATTTTGTTGAGTGTCTGGAGGAGGACAATCTGTTTGAGATTATTGACAAAAGAGTTGTGAAAGAAGCAGAGAAGGGAGAGATCATTGCTGTTGCTAATCTTGCAAGTAGATGCTTAGAGTTGAATGGAAAGAAACGTCCAACTATGAAAGAGATCACATTTGAATTAGAAGGGATTCATGGATTGATTAGGAAAAGTAATGCAGAGAAAAAAGGTGACCAAGTTGAGGTTGCACGAGTTCTAGATTGGCATCCTTGGGATGGATATTCTGCGTCAAATTCATGGGACTCCAAGGTTATACCTACGGTGCAGTAA 2103 0.3999 MMLQLPSLIIVIMLITLPMYALPYSSQENIIAKPGCSSRCGGVDISYPFGMKDPKCYAGKWFEVECRETSNGQKPFIKSLNLEVMAISMNWVYIMNPIFRWNCPSRRAKPEVINLRGSPFVYSQKFNRFVSLGCNNLAVLHSNGSNVACCVSICDNSDEVNNYFDFQREDSCSGRYCCDTSLPKYLLEYNATLHDFNTENNNTVSQRCSYAFITHYSYRLYDYGLNDKDYIPAMLEWEILDNTLDNSTHQFPSESDYATCSRSNVGSSQNTSSAWRCNCLNGFYGNPYVAGGCTAIPGYYNHSQAKKWAIVGVSSSLGSVIFLLGLWLLYKVVRKRVIEKRKQKFFKKNGGLLLQQRMSSNEANVDQAILFSLDDLEKATNNFNMDRVVGKGGQGTVYKGMLVDGRIVAVKKFKVEGNVEEFINEFVILSQINNRNVVRLLGCCLETEIPLLVYEFIPNGNLFEYLHDQKKELLPMTWEMCLRIATEIAGALFYLHSVASKPIYHRDIKSTNILLDEKYRAKIADFGTSRVISVDATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKPISPASSGEFKSLASYFVECLEEDNLFEIIDKRVVKEAEKGEIIAVANLASRCLELNGKKRPTMKEITFELEGIHGLIRKSNAEKKGDQVEVARVLDWHPWDGYSASNSWDSKVIPTVQ 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01953 700 CDD STKc_IRAK 389 655 - -
Viun6g01953 700 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 660 IPR045274 GO:0007166
Viun6g01953 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Viun6g01953 700 SMART serkin_6 383 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01953 700 SUPERFAMILY Protein kinase-like (PK-like) 362 652 IPR011009 -
Viun6g01953 700 Gene3D Phosphorylase Kinase; domain 1 348 456 - -
Viun6g01953 700 Pfam Protein tyrosine and serine/threonine kinase 384 651 IPR001245 GO:0004672|GO:0006468
Viun6g01953 700 Pfam Wall-associated receptor kinase galacturonan-binding 36 89 IPR025287 GO:0030247
Viun6g01953 700 ProSiteProfiles Protein kinase domain profile. 383 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01953 700 FunFam Wall-associated receptor kinase 2 457 675 - -
Viun6g01953 700 FunFam Wall-associated receptor kinase 2 353 456 - -
Viun6g01953 700 Gene3D Transferase(Phosphotransferase) domain 1 457 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01953 Viun-Chr6 26261413 26264504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01953 36 656 Receptor kinase-like Gene Family AT1G69730 43.732 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun6g01953 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01953 - - gmx:100798794 976.081