Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01952 ATGATTCTGCAAATACAATTTCTCATCATCATCATGATGTTCATAACATTGCCTATGTATGCTCTGGCATATTCTGCACTGTCATATCCTACACTGACATATCCTGCAGAGACATATTATACAGAAGGGCTTATTATAGCAAAACCTGGGTGTAGTTTCAGATGTGGAGGTGTTGAAATCTCTTACCCTTTTGGAATGAAAGATCCCAAATGCTACGTAGGCAAGTGGTTTGAAGTAGAATGCAGAGAAACTTCCGAAGGTCAAAAACCCTACTTAAAGTCTTTAAATCTGGAAGTGATAGCCCTAGGCTTGAATTGGGTATATATCATGAATCCAATTTTCCGTTGGAATTGCCCAAGCAGAAGAGCGAAGCCAGAAGTAATCAACCTGAGAGGAAGCCCTTTTGTGTATTCCCAGAAATTCAACATGTTTGTGGCCGTTGGATGCAACAACCTTGCTTTTTTTCAATCCAACGGGTCCACTGTTGGTTGCTGTGTGTCCATTTGTGACGACAGTGAAGAAGTCAACGGTAACTTGGGCTCGATAAGTAGTTGCAGTGGCAGGTACTGCTGCGAGACTTCACTGCCCAACTATCTCTCAGAATATAACGCAACACTTGAAGATTTGAACACCAAAAACAATGACACTGGGAGTGAAAAGTGTCGTTATGCATTCATTGGATATCGAGACTTGTACCAGCGAGATACGTATGGGCTTAACAGTTCGGATTATGTTCCTGCAATGCTTGAGTGGGAGATTTTGGACAACATGCTTCACAATTCTACCCGTCAACTCCTTTCAGAATCAGATCATGCCACTTGTAGTCGCTCTAATTTTGGATCTTCACAAAACACAAGCACTGGTTGGCAATGCTACTGCTTAGGAGGCTTCTATGGCAATCCCTACGTTGCAGGAGGCTGCACTGGTTACAATCACAGTCTAACGAAGAACTGGGCTATAGTAGGAGTTTCGTCAAGTCTGGGATCTGTCATTTTTCTCCTTGGTCTATGGTTGTTGTATAAGGTTGTAAGGAAGAGAGTGATAGAGAAACGTAAACAGAAGTTCTTCAAAAACAATGGTGGTTTGTTGTTGCAACAAAGAATGTCATCTAATGAAGCTAATGTAGAGAAAGCTATTCTCTTTAGCTTGGATGATTTAGAGAAAGCCACTGACAACTTTAATACGGATAGAGTTGTTGGAAAAGGAGGGCAAGGCACTGTTTACAAAGGAATGCTAGTAGATGGTAGAATTGTTGCAGTGAAGAAGTTTAAGGTGGAAGGAAATGTTGAAGAGTTCATCAATGAGTTTGTCATTCTCTCACAAATCAACAATAGAAATGTGGTTAGGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCCCTTCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTTGAATATTTGCATGATCAGAAGAAGGAGTTATTACCAATGACATGGGAGATGTGTTTGAGAATTGGCACGGAAATTGCAGGAGCTCTATTTTACCTGCACTCAGTTGCATCTAAACCCATTTATCATAGAGATATCAAATCCACAAATATACTATTGGATGAAAAGTATAGGGCAAAAATTGCAGATTTTGGAACATCCCGGGTAATTTCTGTTGATGCTACTCATCTTACTACAGTTGTTCAAGGTACCTTTGGTTATTTGGATCCTGAATATTTTCACACCAGTCAATTTACAGAGAAAAGCGATGTGTACAGTTTTGGAGTAGTTCTTGCTGAACTTCTAACAGGCCAAAAACCAATATCACCAGCGAGTTCTGGAGAGTTCAAGAGTTTAGCATCATATTTTGTTGAGTGTCTGGAGGAGGACAATCTGTTTGAGATTATTGACAAAAGAGTTGTGAAAGAAGCAGAGAAGGGACAAATCATTGCCGTTGCTAATCTTGCAAATAGATGCTTAGAGTTGAATGGAAGGAAACGTCCAACTATGAAAGAGATCACATTTGAATTAGAAGGGATTCATGGATTGGTTAGGAAAAGTAATGCAGAGAAAAAAGGTGACCAAGTTGAGCTTGCTCGGGTTCAAGATTGGCATCCTTGGGATGGATATTCTGCGTCAAAGTCATGGGACCCCAAGGTTGTACCTATGGAACAATAA 2133 0.4008 MILQIQFLIIIMMFITLPMYALAYSALSYPTLTYPAETYYTEGLIIAKPGCSFRCGGVEISYPFGMKDPKCYVGKWFEVECRETSEGQKPYLKSLNLEVIALGLNWVYIMNPIFRWNCPSRRAKPEVINLRGSPFVYSQKFNMFVAVGCNNLAFFQSNGSTVGCCVSICDDSEEVNGNLGSISSCSGRYCCETSLPNYLSEYNATLEDLNTKNNDTGSEKCRYAFIGYRDLYQRDTYGLNSSDYVPAMLEWEILDNMLHNSTRQLLSESDHATCSRSNFGSSQNTSTGWQCYCLGGFYGNPYVAGGCTGYNHSLTKNWAIVGVSSSLGSVIFLLGLWLLYKVVRKRVIEKRKQKFFKNNGGLLLQQRMSSNEANVEKAILFSLDDLEKATDNFNTDRVVGKGGQGTVYKGMLVDGRIVAVKKFKVEGNVEEFINEFVILSQINNRNVVRLLGCCLETEIPLLVYEFIPNGNLFEYLHDQKKELLPMTWEMCLRIGTEIAGALFYLHSVASKPIYHRDIKSTNILLDEKYRAKIADFGTSRVISVDATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKPISPASSGEFKSLASYFVECLEEDNLFEIIDKRVVKEAEKGQIIAVANLANRCLELNGRKRPTMKEITFELEGIHGLVRKSNAEKKGDQVELARVQDWHPWDGYSASKSWDPKVVPMEQ 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01952 710 Gene3D Transferase(Phosphotransferase) domain 1 467 689 - -
Viun6g01952 710 Pfam Wall-associated receptor kinase galacturonan-binding 51 94 IPR025287 GO:0030247
Viun6g01952 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Viun6g01952 710 FunFam Wall-associated receptor kinase 2 467 685 - -
Viun6g01952 710 FunFam Wall-associated receptor kinase 2 363 466 - -
Viun6g01952 710 ProSiteProfiles Protein kinase domain profile. 393 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01952 710 SMART serkin_6 393 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01952 710 SUPERFAMILY Protein kinase-like (PK-like) 374 662 IPR011009 -
Viun6g01952 710 Gene3D Phosphorylase Kinase; domain 1 358 466 - -
Viun6g01952 710 Pfam Protein tyrosine and serine/threonine kinase 395 661 IPR001245 GO:0004672|GO:0006468
Viun6g01952 710 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 47 670 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01952 Viun-Chr6 26254730 26258061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01952 51 665 Receptor kinase-like Gene Family AT1G69730 43.696 6.38e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun6g01952 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01952 - - gmx:100798794 953.74