Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01913 ATGGCAACAGCTGAGGCAGCTTCTGCAGGGCTTGGCCCTAGATATGCGCCCGATGACCCTACTCTTCCACAACCGTGGAAGGGGTTGATCGATGGCAGCACTGGTGTGTTATACTATTGGAATCCTGAAACCAATGTTACACAATATGAAAAACCTGCCCCCTTAACGTCACCCTTGCCTGCGCCTGTGGCTTCTGCACCGAGCTTGGCACCTATACCTGTGGCTCACACAATGCAGGCTGGTGGGATGGCACCGCAGCATGGGCAGCAGTTAATGCAAGGGCAGCCCTCGCAACAGCAGGTGGGTCACCTTGCCCAACAGCATGGCCAGTCGATGCCACCTCAGCAACAGCAGCAGCAGAGTCCCCATATGGTGCAGACCACTCAGCAGAATCCCTCTCAGGGTGGTCAGTCTGCACCACAGCAGAACTCATTGATGACGCAGTCAGTGCCGCAGCCAGGTTTACATCAAGCCAGACAGCAAATGATGCAGCCCCAGGGGCAGATGTTGCAGCAGCCTCAAGGACAGCAAATTCAACATCAGATGCCGCCACAGACAATGCATTCTCAGCATTTTGGCCAAGGAATGCCTCAGGATCATGGCTCACATATTGTACCTCCACAAGTACATCAGTTCCCTACCCAAAACATGCACTATATGTCATATCAGCAAAACATTATTACACCCAGGCAACCAAACTCTCAACACATTCAGCCAAACACTGTCTCACCTGGGCAACCTAATCCTCAGCAGGTTCAGCATAACATGCATGGTCAGCCCTTCGAAAATCAACAAACAGCATTTCAAAAGGTAGAGGAAACTGAGTTTAAAAATGGAAGTCAGGTTGGACTTTCACCATCCCAGTATCCGCAGAGGAGTACCTTGCCTGCTCAGAATAATCAGAACCTTCCTGCTGACACAGCTTCTGGTCAAATGCCTAATGTAGGTGTCAATGCTGGTCAGCCACAGCAATTCAGGACTTCCTTATCAGGCAGTGTACAGAAGTCACCCTCTGCAATGCCATTGCAGCAGGGTGGATCTGATTTATATTACCAACATGGTCCTAACTTTAATAAGCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTGTTGGCCAAAAGATGAGTCACGAGGATAATTTACGTGGCAGAGCAGGAAATGAATATTACTATAATTCTAACAAAGATATGCCAACAATGGGTCGTCCGCAACCAGATATGACTCAAATACCCGTTCCTAGAAATCAGCAGGATATGAGGATCGGCAATACTCCTTTTCAAAATGTAATGCCAAGTGGAAATGGAAGTGGTATTGCTGGGAATGCTATGCCTAGCATGTTTGTTCCTCCAATGGGAGGACCTTCACCTCTCTCTAATAACACTTTAATGAGGCCTTCCTATATGGGATCTTCTGATGCAAGTGATCTTTCACCTGCTGAAATTTACTGCCAGCAACATGAAGTTACAGCAACGGGTGGTGACATTCCCCCTCCTTTCATGACATTTGATGCTACTGGTTTTCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAGGGTAGAGACATAGTAGCAATTGCCAAAACTGGCTCAGGGAAAACATTGGGTTACTTAATCCCTGCCTTCATTCTTCTTAGACAGCGACAAAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGGGAACTTGCGACACAGATTCATAATGAGGTTATCAAGTTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCTTTCAACTAAAGGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCCGGTCGGCTCAATGACATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTACTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCCGGAAGATTGTGGATGAGATTCCTGCACGAAGACAAACTCTCATGTACACTGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGTGAACTTCTTGTGAATCCAGTCCAGGTTAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCCATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAGCAGAGGCGTTTGGAGCAGATCCTCAGATCCCAAGAACGAGGTTCTAAGGTCATAATATTTTGCTCCACGAAGAGGTTATGTGATCAACTAGCTCGTAATATTGGCCGCACTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGATTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTAATAAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACATTTTTCTCTGAGCAGGACTGGAAACACGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTATGCGTGGGCCATCAAACTTTGGAAAGGAACGGGGTGGGATGAGTAGGTTTGATTCTGGTGGTGGGCGTTGGGAGACTGGTGGTCGTGGTAGCATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTGGTGGTCGTGGGGGTGGCATGAGGGATGGTGGCTTTGGGGGCCGTGGGGGTGGCATGAGGGATGGTGGTGGCTTTGGTGGTCGAGGTGGAGGCATGAGGGATGGGGGATTTGGTGGACGTGGTGGTGGCGGTTTTGGTGGACGTGGTGGCATGAGGGATGGAGCTGGTGGGAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGAGGTAGGGGATCTGGTGGTCTTCGTGGTGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGTGGACAGGGGCGCGGACGTGGCCGATTTGACAACAGAAGGGACGCTTCTTACAAAAGTAGAGGAAGAAGTTATAGTCGAAGCCCAGATAGAGTCCGAACATGGGATTATAGTAGTAGTAGCAGAAGCCGTAGTAGAAGCAGAAGCAGGAGTTGGAGCAGGGGTCGTAGTAGAAGTCGAAGTCGCAGCTGGTCTCGTGGCCGAAGTTACAGTCGGAGCCGGAGCCGGAGCCGAAGCCATACCCGCAGCCGGAGTCGGAGCCGGAGCCCCAGTTATGACAGGCGGGATAGGTCAGTTCAACAAGTTCCTGATCGAAAGGATCTTAGGGCACACGAAGTGGGAACTTCTGATCCAAGAATGCTTCCCTTGTCTCCTGGTCCTGGCACACAGGAGAATTCCTCTTTGGGAAGTGAACAAGGGCAGCAGCAATCTGTTATTGGTAGCTCTGATCCAGGGAATCCAGAAGCTGTAGCAGACATTAGTCATCAATCAGGTTCTGGTGTTTAG 3573 0.4895 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGVLYYWNPETNVTQYEKPAPLTSPLPAPVASAPSLAPIPVAHTMQAGGMAPQHGQQLMQGQPSQQQVGHLAQQHGQSMPPQQQQQQSPHMVQTTQQNPSQGGQSAPQQNSLMTQSVPQPGLHQARQQMMQPQGQMLQQPQGQQIQHQMPPQTMHSQHFGQGMPQDHGSHIVPPQVHQFPTQNMHYMSYQQNIITPRQPNSQHIQPNTVSPGQPNPQQVQHNMHGQPFENQQTAFQKVEETEFKNGSQVGLSPSQYPQRSTLPAQNNQNLPADTASGQMPNVGVNAGQPQQFRTSLSGSVQKSPSAMPLQQGGSDLYYQHGPNFNKQMSPGMMHGHPSNVHPVGQKMSHEDNLRGRAGNEYYYNSNKDMPTMGRPQPDMTQIPVPRNQQDMRIGNTPFQNVMPSGNGSGIAGNAMPSMFVPPMGGPSPLSNNTLMRPSYMGSSDASDLSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRQNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKAFQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIASELLVNPVQVNIGSADELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMAMRGPSNFGKERGGMSRFDSGGGRWETGGRGSMRDGGFGGRGGMRDGGFGGRGGGMRDGGFGGRGGGMRDGGGFGGRGGGMRDGGFGGRGGGGFGGRGGMRDGAGGRGDFFPGRGNRGRGSGGLRGGHVGWGRGERGMDDRGQGRGRGRFDNRRDASYKSRGRSYSRSPDRVRTWDYSSSSRSRSRSRSRSWSRGRSRSRSRSWSRGRSYSRSRSRSRSHTRSRSRSRSPSYDRRDRSVQQVPDRKDLRAHEVGTSDPRMLPLSPGPGTQENSSLGSEQGQQQSVIGSSDPGNPEAVADISHQSGSGV 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01913 1190 MobiDBLite consensus disorder prediction 1148 1172 - -
Viun6g01913 1190 Gene3D - 481 713 IPR027417 -
Viun6g01913 1190 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 505 533 IPR014014 GO:0003724
Viun6g01913 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 859 IPR027417 -
Viun6g01913 1190 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Viun6g01913 1190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 536 710 IPR014001 -
Viun6g01913 1190 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 478 883 - -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 83 196 - -
Viun6g01913 1190 Pfam WW domain 22 52 IPR001202 GO:0005515
Viun6g01913 1190 Pfam DEAD/DEAH box helicase 529 699 IPR011545 GO:0003676|GO:0005524
Viun6g01913 1190 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 883 IPR001650 -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 1069 1107 - -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 81 201 - -
Viun6g01913 1190 FunFam ATP-dependent RNA helicase RhlB 714 886 - -
Viun6g01913 1190 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Viun6g01913 1190 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 656 664 IPR000629 -
Viun6g01913 1190 SMART helicmild6 760 844 IPR001650 -
Viun6g01913 1190 CDD DEADc 516 710 - -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 1053 1068 - -
Viun6g01913 1190 Gene3D - 714 886 IPR027417 -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 886 1190 - -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 1 27 - -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 275 322 - -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 231 256 - -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 1108 1136 - -
Viun6g01913 1190 SMART ww_5 21 54 IPR001202 GO:0005515
Viun6g01913 1190 CDD WW 23 54 IPR001202 GO:0005515
Viun6g01913 1190 SMART ultradead3 524 727 IPR014001 -
Viun6g01913 1190 FunFam probable ATP-dependent RNA helicase DDX17 471 713 - -
Viun6g01913 1190 Pfam Helicase conserved C-terminal domain 736 844 IPR001650 -
Viun6g01913 1190 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Viun6g01913 1190 CDD SF2_C_DEAD 724 853 - -
Viun6g01913 1190 MobiDBLite consensus disorder prediction 1014 1052 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01913 Viun-Chr6 26009646 26017545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01913 503 884 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 9.10e-64 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01913 K12823 - gmx:100807830 1464.51