Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01893 ATGGAAGTGAAAGGAAGGGTAAGCACCATAGTCCAAAGTGAAGATGAGATGGACCTTCGAAGAGGTCCTTGGACCGTCGATGAAGACCTTGCTCTCATCAATTACATTGCCAATCACGGAGAAGGTCGATGGAATTCCCTTGCACGTTCCGCCGGACTCAAACGAACTGGCAAGAGTTGCAGATTGAGATGGTTGAATTATCTTCGTCCTGATGTTCGTCGTGGCAACATCACTCTCGAAGAACAGCTTCTCATTCTCGAGCTCCATGGTCGCTGGGGAAACCGATGGTCTAAAATTGCGCAATACTTGCCGGGAAGAACTGATAACGAGATCAAAAATTACTGGAGAACTCGTGTTCAGAAGCACGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCGAGGCTGGTGGAACGCATTCAAGCCGCCGCCGCCGCCGCCAACACCGCTGCGGCCGCCGTCGGTTCTCCCACGGCTTCTGCCAGTGCTACTACGACCATCACCACCAACAACAATATAACATACAACTACAACACCAACAACAACAACCTTAACAACAGTTTTGAGGTGCATAGTGGGAGCATGATGTTGAGTCCGGCAATTATGAACAACAACTTCGGTGGTTCACAGAGTTACACTCCAGAGAATAGTAGCACGGGTGCATCATCTGACTCGTTTGGGACCCAGGTTTCACCTGTCTCGGAGTTGACTCAGGATTACTACAATAATGTCACGGTCGGTAACAGCAACAGCAACAGTAACAATAACAATAACCCTAATCCTGATTACTACCAACAAGCACAAGATCAACTGAGTTTTTTGGATTGCATCACAAGCCCGTCAGGGTTGTTCTCTCAGCAGCTGGATTTCCAATCCATGGAACCAAACACGCCATGGATTCAGAGTAATGGGGACACATCCAACGGTTTCTGGAACGTTGAAAACATGTTGCTGTTCCAACAACTCGCTGACAACATGTGA 1014 0.4803 MEVKGRVSTIVQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAAANTAAAAVGSPTASASATTTITTNNNITYNYNTNNNNLNNSFEVHSGSMMLSPAIMNNNFGGSQSYTPENSSTGASSDSFGTQVSPVSELTQDYYNNVTVGNSNSNSNNNNNPNPDYYQQAQDQLSFLDCITSPSGLFSQQLDFQSMEPNTPWIQSNGDTSNGFWNVENMLLFQQLADNM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01893 337 CDD SANT 89 117 IPR001005 -
Viun6g01893 337 MobiDBLite consensus disorder prediction 254 275 - -
Viun6g01893 337 FunFam MYB transcription factor 78 141 - -
Viun6g01893 337 SMART sant 20 70 IPR001005 -
Viun6g01893 337 SMART sant 73 121 IPR001005 -
Viun6g01893 337 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Viun6g01893 337 CDD SANT 23 68 IPR001005 -
Viun6g01893 337 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Viun6g01893 337 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Viun6g01893 337 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Viun6g01893 337 Gene3D - 78 141 - -
Viun6g01893 337 MobiDBLite consensus disorder prediction 219 240 - -
Viun6g01893 337 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Viun6g01893 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Viun6g01893 337 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun6g01893 337 Gene3D - 18 74 - -
Viun6g01893 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
Viun6g01893 337 FunFam Myb transcription factor 21 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01893 Viun-Chr6 25885846 25888045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01893 1 324 MYB Transcription Factor Family AT3G06490 53.982 4.01e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun6g01893 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01893 K09422 - gmx:100305347 507.294