Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01866 ATGGCGGAGGAGAAAAGAGAGGAAGAAGCGCACCCCAACAACGAACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAACAACTTCACTTTCCCTTCCCAACCACTCACCATCTTCGACGCCATGCCGCCGCCGCCCTTCTCTTCTTCCTGCGACCACAAGGCCTCGCCCTTCGGCTTCCTCGACCTGCTCGGGGTCCACGACTACCACGCTCCGCTGTTCGATTGGCTCCCCTCCGCTGCGCCGTCGCGGGCCAGCTCCAACGTGCCGGACTCCTCCGAGGTGCTCAACACTCCCGCGTCGCCCAACTTGTCGTCGATTTCGTCGTCTTCGAATGAGGCCACCGCCACCGCCATGACCACCACCATGGCGGGGCAGAGTGGTAAAGGTGGGTTTGAACACGAGGAAGCTGAGGCAGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGAGGACCAGGATCAAGACAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGCGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCACCGGTTGCGGCGTGAAGAAGCGAGTGGAGCGTTCCTCCGACGACCCTTCCATCGTGGTCACCACTTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCTCGGGCCAGCTTCGGGTTCGTGAACGAGCCTGGTGGGTTGGGACATGCCGGCTCCTCACACTTCGCGCTGCCACATCAGCACCATCACCAACCCCAAGCTTCGGCTTTGATATACAACTCCAACCCTCCTTTTGTAAACTCCGCTAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCACGACCCAGCGAACCGTCAAGGTTTCGGGCACGAGGCTATGTTGAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCGTCGCAGGTGAGGAAGGAGGAGAAGGAATGA 1050 0.5686 MAEEKREEEAHPNNEPSTTMAFSDEIPNNFTFPSQPLTIFDAMPPPPFSSSCDHKASPFGFLDLLGVHDYHAPLFDWLPSAAPSRASSNVPDSSEVLNTPASPNLSSISSSSNEATATAMTTTMAGQSGKGGFEHEEAEAEEEEEGGNGGREDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTTGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRASFGFVNEPGGLGHAGSSHFALPHQHHHQPQASALIYNSNPPFVNSASNFMNTTSFGGFGHDPANRQGFGHEAMLRDNGLLQDIIVPSQVRKEEKE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01866 349 MobiDBLite consensus disorder prediction 1 42 - -
Viun6g01866 349 MobiDBLite consensus disorder prediction 14 36 - -
Viun6g01866 349 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g01866 349 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g01866 349 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g01866 349 MobiDBLite consensus disorder prediction 82 178 - -
Viun6g01866 349 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g01866 349 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g01866 349 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 281 IPR044810 GO:0003700
Viun6g01866 349 MobiDBLite consensus disorder prediction 82 128 - -
Viun6g01866 349 FunFam WRKY transcription factor 57 175 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01866 Viun-Chr6 25742838 25745327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01866 159 346 WRKY Transcription Factor Family AT5G49520 57.635 1.48e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun6g01866 WRKY 4.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01866 - - gmx:100812252 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01866 6 25742838 25745327 Viun6g01866 6 25742838 25745327 ECH
Viun6g01866 6 25742838 25745327 Viun3g05628 3 61938728 61940900 PCT