Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01862 ATGCTCCAGGCATTGATGAGTCTTATCGCGCGCTGTTGGAAACCGTTCGGGCTCGGTGACGACGCCAATGCCGGAAGAGAATGCAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTCGCCGCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGGCCCTTCGGCACCTTCGTCGGAGTCTATGACGGCCACGGCGGCCCCGATTGTTCGCGTTATGTTTGTGATAACTTGTTCCGTAATCTCCAAGCGATATTGGCCGAGTCACATAATAGTGTTGTGACATCTGAGGCCATTCAACAGGCGTTCCGGCGGACCGAGGAGGGATTCACGGCGCTTGTTTCAGAGTTGTGGAGCTCCCGGCCGCAAATTGCAACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGCAACACTGGTGGGATGGCTGCAATGCAGCTGTCCACGGAGCACAACGCGAATATTGAGGCTGTTAGGCAGGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTTAAACATGGAGTGTGGAGAGTCAAGGGCATAATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCCGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTGTTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCGTCAGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGTGCGAAGAGACTTATCAAGGCTGCCCTGCAAGAAGCGGCAAGAAAACGTGAAATGCGATATTCAGACCTTTATAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATTCGCCACTCACAGTTCGAAGTGCGCTCGATCACTGA 1113 0.5067 MLQALMSLIARCWKPFGLGDDANAGRECKDGLLWFRDIGRFAAGDFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPDCSRYVCDNLFRNLQAILAESHNSVVTSEAIQQAFRRTEEGFTALVSELWSSRPQIATTGTCCLVGVICRQTLFVASLGDSRAVLGRRVGNTGGMAAMQLSTEHNANIEAVRQELKELHPDDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTVISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLIKAALQEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNSPLTVRSALDH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01862 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Viun6g01862 370 PANTHER PROTEIN PHOSPHATASE 43 345 IPR015655 GO:0004722|GO:0006470
Viun6g01862 370 SMART PP2C_4 39 345 IPR001932 -
Viun6g01862 370 Gene3D - 39 355 IPR036457 -
Viun6g01862 370 Pfam Protein phosphatase 2C 70 316 IPR001932 -
Viun6g01862 370 ProSiteProfiles PPM-type phosphatase domain profile. 45 347 IPR001932 -
Viun6g01862 370 FunFam Probable protein phosphatase 2C 42 36 355 - -
Viun6g01862 370 SUPERFAMILY PP2C-like 54 348 IPR036457 -
Viun6g01862 370 CDD PP2Cc 46 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01862 Viun-Chr6 25666791 25674945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01862 1 367 PP2C-type Phosphatase Gene Family AT4G38520 59.474 9.91e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01862 K01102 - gmx:100813333 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01862 6 25666791 25674945 Viun6g01862 6 25666791 25674945 ECH
Viun3g05634 3 62003882 62007904 Viun6g01862 6 25666791 25674945 PCT