Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01860 ATGCCTAATCTTCCTTCATCTTCTTCTTTTCTTCTTTCTGCTATTCTCATTTTTTGCATCTCACATTCTGCCCTTGCCACCAACCATGCAGAAACTATCGCTGACTCTCCTATGTTGACGCAAAAGTTAGGAATTAATCGTACCATCAAAGTAGACATCAATGGCAACGGGGATTTCACAAGTGTACAAGCTGCCATAGATTCCATTCCTGAAGATAATTCTCAGTGGGTAATAGTTCATATCAGAAAAGGAGTATACAGAGAAAAAGTGCGCATACGATCTAATAAGCCTTATATATTCCTGAGAGGGAATGGGCGAGGAAGAACCGGCATAACTTGGTCTCAGAGCTCTACAGACAACGTGGCTTCTGCCACCGTCAGAATCGAAGCACATGACGTCATTGTCTTTGGGATTAGCTTCCAGAATGAGGCACCTACGGGGCGTGCTTATACCTCGCAAAACCAATCGGTGGCAGTGTATGTGGCAGCAGAAAAAGTAGCATTTTATCATTGTTCATTTTACAGTACTCACAACACTCTGTTTGATCAAAAAGGTAGACACTACTATGCTAATTGCTACATTCAAGGCTCAATTGATTTCATATTTGGTCGTGCCAGAACAATCTTCTATCACCCTGAAATATTTGTGGTGGATGATAAAAGGTTAACGGTTCAAGGTTCAATCACGGCTCATAATAGGGAAAATGCAGAAGAGTTGAATGGATATATCTTCATCAAAGGCATGGTTTATGGCACTGGTGCAGTTTACCTGGGAAGGGCCAAGGGTCCTTATTCTAGGGTTATTTTTTCTGAGACATATCTGTCCAAGACCATTGTCCCTGCGGGGTGGACCAATTGGAGCCATTCTGGTAGCACAAAAAACATAGTCCATGGGGAGTACAATTGCCGTGGACCTGGTGCTGTGAGGGAGGGACGTGCTCCTTGGTCGATGCAGCTAACTAAGAAAGACGTTGAGCAATTTTTATCTATTGATTATATTGATGGCAAAAATTGGTTGCCAGTATGGTTGTAA 1032 0.4254 MPNLPSSSSFLLSAILIFCISHSALATNHAETIADSPMLTQKLGINRTIKVDINGNGDFTSVQAAIDSIPEDNSQWVIVHIRKGVYREKVRIRSNKPYIFLRGNGRGRTGITWSQSSTDNVASATVRIEAHDVIVFGISFQNEAPTGRAYTSQNQSVAVYVAAEKVAFYHCSFYSTHNTLFDQKGRHYYANCYIQGSIDFIFGRARTIFYHPEIFVVDDKRLTVQGSITAHNRENAEELNGYIFIKGMVYGTGAVYLGRAKGPYSRVIFSETYLSKTIVPAGWTNWSHSGSTKNIVHGEYNCRGPGAVREGRAPWSMQLTKKDVEQFLSIDYIDGKNWLPVWL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01860 343 SUPERFAMILY Pectin lyase-like 45 341 IPR011050 -
Viun6g01860 343 ProSitePatterns Pectinesterase signature 2. 194 203 IPR033131 -
Viun6g01860 343 Gene3D - 43 342 IPR012334 -
Viun6g01860 343 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 45 339 - -
Viun6g01860 343 FunFam Pectinesterase 44 343 - -
Viun6g01860 343 Pfam Pectinesterase 50 335 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01860 Viun-Chr6 25654241 25655629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01860 46 339 Carbohydrate Esterase AT5G47500 37.171 7.51e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01860 - - gmx:100792967 530.406