Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01857 ATGGGAACCCCAGAAGAAGAAGGTGAAGAAAAGCTTCTCAGAAAGATAGAACGTCTAGAAGCTGGTCACGCTCACCTCAAGCAAGAAATGTCCAACTTCCAGCTCCTCCAAAACCACAGGTCTCATTCGAGGTTTGGTGCTGCTACGTCTAACCAACCCTCTTCTTCTTCCCTGCATCAAAATGGAAACAAGTATCTCAACATCTTGCAGTCAATGGGCCACTCTGTTCATGTTTTGGATCTTCAATGTCGCGTCATGTACTGGAACCCTAGTGCTGAGAATCTGTATGGCTATGCAGCAGAAGAGGTTCTTGGGCGGGATGGGATTGAGATGCTTGTGGATCCCAGGGATTTTGGTTTGGCCAATGATGTGTTCAACCATGTAAAAATGGGAGAGAGTTGGAGAGGCCAGTTCCCTGTTAAGAATAAGAAAGGCGATAGGTTCTATGCCGTGTCAACCAATACACCCTTCTATGATGAAGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCTGTGATTCACGGCCCTTTCTTGAATCCAGAATTCCCTTTCTAGGAGCAGAGAGTGCAGAACCTGTATCGAGTTCCAATGGTCGTAGGAGTAGCATTTCAGATAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTGCTCTGGCTTCGAGAATTTCAAATTTGGCTTCAAAGGTGAGTAACAAAGTTAAGTCTAGAATCAGGACAGGAGAATTTAGTGTCAATCGTGAAGGTGGGAGCGGAGAAAGTCGTCATTCTGAGCATAGTTTGTCGGACTGTGCTGTTTCTGATCAGAGAGAAGATGGAAATTCCAGTGGAGCTAGCACACCCAGAGGAGATGTGCTAAAATCTCCTTTTGGTGCATTTTCTCCTGCTGAAGAGAAATCCCAAGGGAAAACCATGAGGGACTCCAGTGATCAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCTAAGGCTGAAACATGGATCCAAAAGAAATCATTGTCATGGCCTTGGAAAGCAAACAATCAGGAAGGATCTGACCAAGAGAATGAGTTGATTAATCAGAAGAATCTGTCTTCTGGGTTGAAGCCAGAAAGCCAGGCAGGCGAAAGCAATGGACCTGTTAATAACGAGGCTTCAGGATCCTGGTCCTCGTTTGTTAATGTTAACAGCACAAGTAGTACCAGCAGCTGCGGAAGTGGTAGCAGCTGTGCTGCCAATAATAAAGTGGATGTTGACTCCGATTGCTTGGATTATGAAATTTTGTGGGAGGACTTGACAGTTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTTTATCATGCTCTATGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATATTCAGATGATGTGCTACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGTCATCCAAATATTATTCTATTTATGGGGGCTGTGACTTCACCTCAACATTTATGCATCGTGACAGAGTTTCTCCCACGGGGAAGCTTATTTCGATTGCTTCAAAGAAACACATCCAAACTAGAGCGGAGACGGAGAGTTCATATGGCCGTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCTATCATTCATCGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGGCTTTCCCGTCTTAAACATGAAACTTATCTCACTACTAAGACAGGAAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACTGTCAGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGATATTATGGGAACTCACAACCGAAAAGATCCCTTGGGATACTCTCAACCCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGACTAGAAATTCCAGAAGATGTTGATCCACAGTGGGCTTCTATAATTGAGAGCTGCTTGCACAGAGATCCAGCTTGCCGACCAACATTCCAGGAACTGGTGGAAAGGCTTAGAGAACTGCAGAGACAATATGCAATTCAATTTCAGGCAGCTCGATCTGCTGAGGAAGCCACTCAAAAGGAGTTCTCTAGCAAATAG 2121 0.4422 MGTPEEEGEEKLLRKIERLEAGHAHLKQEMSNFQLLQNHRSHSRFGAATSNQPSSSSLHQNGNKYLNILQSMGHSVHVLDLQCRVMYWNPSAENLYGYAAEEVLGRDGIEMLVDPRDFGLANDVFNHVKMGESWRGQFPVKNKKGDRFYAVSTNTPFYDEDGSLVGVICVSCDSRPFLESRIPFLGAESAEPVSSSNGRRSSISDKLGLDSQQPLQVALASRISNLASKVSNKVKSRIRTGEFSVNREGGSGESRHSEHSLSDCAVSDQREDGNSSGASTPRGDVLKSPFGAFSPAEEKSQGKTMRDSSDQSEGKPIHKIITSKAETWIQKKSLSWPWKANNQEGSDQENELINQKNLSSGLKPESQAGESNGPVNNEASGSWSSFVNVNSTSSTSSCGSGSSCAANNKVDVDSDCLDYEILWEDLTVGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVLLSFRQEVSVMKRLRHPNIILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKLERRRRVHMAVDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNELSDEKSDVYSFGVILWELTTEKIPWDTLNPMQVIGAVGFMNHRLEIPEDVDPQWASIIESCLHRDPACRPTFQELVERLRELQRQYAIQFQAARSAEEATQKEFSSK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01857 706 CDD STKc_MAP3K-like 432 678 - -
Viun6g01857 706 PRINTS Tyrosine kinase catalytic domain signature 500 513 IPR001245 GO:0004672|GO:0006468
Viun6g01857 706 PRINTS Tyrosine kinase catalytic domain signature 586 596 IPR001245 GO:0004672|GO:0006468
Viun6g01857 706 PRINTS Tyrosine kinase catalytic domain signature 605 627 IPR001245 GO:0004672|GO:0006468
Viun6g01857 706 PRINTS Tyrosine kinase catalytic domain signature 539 557 IPR001245 GO:0004672|GO:0006468
Viun6g01857 706 PRINTS Tyrosine kinase catalytic domain signature 649 671 IPR001245 GO:0004672|GO:0006468
Viun6g01857 706 SUPERFAMILY Protein kinase-like (PK-like) 416 678 IPR011009 -
Viun6g01857 706 MobiDBLite consensus disorder prediction 300 316 - -
Viun6g01857 706 Gene3D Transferase(Phosphotransferase) domain 1 504 706 - -
Viun6g01857 706 Pfam PAS fold 65 170 IPR013767 GO:0006355
Viun6g01857 706 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 222 688 - -
Viun6g01857 706 CDD PAS 76 173 IPR000014 -
Viun6g01857 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Viun6g01857 706 MobiDBLite consensus disorder prediction 360 382 - -
Viun6g01857 706 Coils Coil 9 29 - -
Viun6g01857 706 MobiDBLite consensus disorder prediction 241 316 - -
Viun6g01857 706 ProSiteProfiles PAS repeat profile. 61 132 IPR000014 -
Viun6g01857 706 Gene3D PAS domain 74 175 - -
Viun6g01857 706 FunFam PAS domain-containing protein tyrosine kinase 419 503 - -
Viun6g01857 706 MobiDBLite consensus disorder prediction 267 282 - -
Viun6g01857 706 Coils Coil 678 698 - -
Viun6g01857 706 MobiDBLite consensus disorder prediction 249 266 - -
Viun6g01857 706 Gene3D Phosphorylase Kinase; domain 1 419 503 - -
Viun6g01857 706 SMART serkin_6 426 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01857 706 SMART pas_2 63 130 IPR000014 -
Viun6g01857 706 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 170 IPR035965 -
Viun6g01857 706 ProSiteProfiles Protein kinase domain profile. 426 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01857 706 NCBIfam PAS domain S-box protein 64 170 IPR000014 -
Viun6g01857 706 FunFam PAS domain-containing protein tyrosine kinase family protein 504 696 - -
Viun6g01857 706 Pfam Protein tyrosine and serine/threonine kinase 426 678 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01857 Viun-Chr6 25641537 25646571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01857 10 695 MAP Kinase Kinase Kinase AT3G06620 57.784 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Viun6g01857 PK_Tyr_Ser-Thr 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01857 - - gmx:100815858 1175.61