Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01854 ATGAACTGTTCCGTCCTCTCTTCCGTGGCGTCACCCACCATCCTTGCCCATTCCTCCGCCACGCCAAGAATTCACCCCTCCACCCCAAACCTTAACCGCCACAGCGTCGTTACCACCACCAAATCCGTCACACCCTCCACCCAAACTGCCACACTCCACACAGTCTTCCACCACCCTCAACCGCTTCGAATTACCACGGAATCAGTCCCGCAACACCAAATCCCTAACATTGGTTTCACCCAAATGTTTGGCTCCACCATTGTGGTCCATCCACTCTCCTTCCGCATCCTCGCTCACTCAGAAAACACGTGCAAAATTCTCGGTATTTCTCCGTTCGATCTCTGCGGCGCCGACGCTCGCTCTCTCTTCACTCGCTCCAGTGCCCTACTCCTCCAAAAAGCCTTCAAAGCACGCGAAGTGAGCCTGACGAACCCTGTGTTGATCCAGTCTCGAACCTCCGGAGAAGCTTTCCACGGCATCCTCCACCGAACCAACGCCGGAATCGTGGTGGATTTGGAGCCAGCATCATGGATCGAGAACTCCGGACTTTCAACCTTTGAATGTGGTGGTAGTGATGTTAAGCTTCTCTGCAACAGCGTTGTTGAAACCGTAAGAGAAATGACAGGGTACGATAGGGTTCTGATGTACAAGTTTCACGAGGATGAGCACGGAGAGGTGGTTGCAGAGAGGAAGAGGCCCGATCTGAAACCCTACATGGGCTTACATTTTCCCGCCGGCGATATTCCAGAGGCTTCAAGGGTTTCGTTTCTGCATAACAGGGTGAGGATGATTGTGGATCGTGACTCTTCCCCCGTGAGGGTGGTGCAGGATGAGACTCTGGTGGAGCCTGTGTGTTTGACCAAGTCAACGCTCCGTGCTCCTCATGGGTGTCACGTTGAGTACATGGCTAACATGGGGTGTGTGGGTTCTTTGGTGATAAGTGTTGTTGTTGACGGTGGCGAGGGTGGCATGAAGCTGTGGGGACTCCTTATTTGCCACCATGCTTCTCCTAAGCTTCTTTCTTTTCCTCTGAGAAGTGCTTGTGAGTCTGTGGTGCAGGCCTTTGGGGAAGGGTTGAAGATGGAGAAACAGAGTCCTGTGGAGGAATCTTCTGCTTTGTGCTTCCGTTGA 1131 0.5296 MNCSVLSSVASPTILAHSSATPRIHPSTPNLNRHSVVTTTKSVTPSTQTATLHTVFHHPQPLRITTESVPQHQIPNIGFTQMFGSTIVVHPLSFRILAHSENTCKILGISPFDLCGADARSLFTRSSALLLQKAFKAREVSLTNPVLIQSRTSGEAFHGILHRTNAGIVVDLEPASWIENSGLSTFECGGSDVKLLCNSVVETVREMTGYDRVLMYKFHEDEHGEVVAERKRPDLKPYMGLHFPAGDIPEASRVSFLHNRVRMIVDRDSSPVRVVQDETLVEPVCLTKSTLRAPHGCHVEYMANMGCVGSLVISVVVDGGEGGMKLWGLLICHHASPKLLSFPLRSACESVVQAFGEGLKMEKQSPVEESSALCFR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01854 376 SUPERFAMILY PYP-like sensor domain (PAS domain) 71 175 IPR035965 -
Viun6g01854 376 Pfam GAF domain 193 357 IPR003018 GO:0005515
Viun6g01854 376 ProSitePatterns Phytochrome chromophore attachment site signature. 292 301 IPR013516 -
Viun6g01854 376 PRINTS Phytochrome signature 292 313 IPR001294 GO:0006355|GO:0009584
Viun6g01854 376 PRINTS Phytochrome signature 123 145 IPR001294 GO:0006355|GO:0009584
Viun6g01854 376 SMART gaf_1 192 371 IPR003018 GO:0005515
Viun6g01854 376 SUPERFAMILY GAF domain-like 192 357 - -
Viun6g01854 376 Gene3D - 72 365 IPR029016 -
Viun6g01854 376 Pfam PAS fold 72 175 IPR013654 GO:0006355
Viun6g01854 376 Gene3D PAS domain 73 295 - -
Viun6g01854 376 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 192 353 IPR016132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01854 Viun-Chr6 25615605 25616954 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01854 16 376 Histidine Kinase Gene Family AT2G18790 45.564 3.09e-112 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01854 K12121 - vun:114186708 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01854 6 25615605 25616954 Viun6g01854 6 25615605 25616954 ECH