Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01836 ATGGTAGACTTGTACCATGTTAGTTTCAGTACAGTGGATGAAAATTCTAGTTCATCCACTGATATTTTCTGGGGCAGTGAGGAGCTGAATGAAGTAAAGAAGGTACACTTTTCTGGAGCAGAAGATCATAGAGTTTATGGGGGAGTAGACACCTTTTGCTCTAATTTCGAGTTTTCCCCAGATCATCCACCAGGATACCTTATATCCACTAATCAAGAAAAGTATCACCAGCAACAATCATACCATGATTATGGCCATTTCGATGATAACCTTCAGTTTGACATGGTTTCTCCATCACTTCAATTTGATGCACAATATGCAACCAGGGTTCCACTGTGTGGCACAACAGAGGATAAGCCACACTCAGCTATCCCTTTAGCCTCACTTGAGATCTTGAAGAACTACGGCAAGGGATTCAAGAGGTTTTCCAATGAAGGAAAATCCCTGCAGCCAGTGGTTGATTCTGTGGCTACAGATGAATTTGGTTTTAGAAAGCTCTCAACTGAAGATATCATGAGGATAGCAGGAACAAGGTTCATACAATCATCATCTTCAGAGTCAGAACCTTTGACTTTGTTGGAAACTCACCCTTATGGGGTTTCCTTCTCTGGATTCTCTGATGAGGAGAAAGAGGACGTGGCACTAGCTGAGTCCCTCTTGGCTTGTGCTGAGAAAGTTGGTGATCAACAATTTGAACGTGCAAGCAAGTTGCTAAGTCACTGCGAATCATTGTCAAGCAAAACTGGGAGCCCCGTTAAGAGAATTGTTCATTATTTTGCTGAAGCACTTCTCCACAGGATAGATAGAGAAACAGGAAGAGGTTCATCGAAGGATCTGCATAAAGGCCATTCATTTGATCCTGAAGTGGCAGCCAAGGAACTAAACCCCGCTATTGTTGCATTTTATGAAGACCTTCCCTTTTGTCAAATTTCAGTGTTCACTGCAGTTCAAGCTATAATAGAAGATGTAGCTGAAGCAAAGAAGATTCATGTTATTGATCTTGAAATCAGAAAGGGGGGCCATTGGGCTATCCTAATGCAAGCCCTTGAGTCAAGGCATCAATGTCCAGTTGAGCTTCTGAAGATTACCGCTATTGAAAGTGGAACCACTAGACACATGGTTGAGGACACTGGTAAGAGATTGAAGGATTTTGCTCAAGGTTTGAACATACCCTTCTCTTTCAACATTGTCATGGTACCAGACCTATTAGATCTTAGAGAAGATCTTTTTGAGATCGATCCTGAGGAAGCGATTGCTGTTTATTCTCAGTTTGCACTCAGAGCCAAGATTCAACAATCAGACCAGCTTGAAATCATCATGAGAGTGATTAGATCCTTGAATCCTAATGTGATGGTGGTAGCTGAAATTGAGGCAAATCACAACTCCACATCTTTTGTAAACCGTTTCATTGAGGCTCTTTTCTTCTTCAGTGCATTCTTTGATTGTCTTGAGGCTTGCATGAAGAGGGATGAGAAGAATCGAATGATTATAGAGTCACTATACTTGAGTCATGGGATCAAAAACATTGTGGCCACAGAAGGAGCAGAAAGAAAGACTAGGAATGTGAAGATTGATGTGTGGAGGGCCTTCTTCTCCCGCTTTGGAATGGTGGAGAAAGAACTGAGCACTTTGTCTTTATACCAAGCAGATTTGGTGAGTAAAAGATTTCCTTGTGGAAGTTCTTGCACGTTTGATAAGAATGGACAGTGCCTTCTTGTTGGGTGGAAAGGAACACCGATTAATTCTGTTTCTGTCTGGAAATTCATTTGA 1770 0.4169 MVDLYHVSFSTVDENSSSSTDIFWGSEELNEVKKVHFSGAEDHRVYGGVDTFCSNFEFSPDHPPGYLISTNQEKYHQQQSYHDYGHFDDNLQFDMVSPSLQFDAQYATRVPLCGTTEDKPHSAIPLASLEILKNYGKGFKRFSNEGKSLQPVVDSVATDEFGFRKLSTEDIMRIAGTRFIQSSSSESEPLTLLETHPYGVSFSGFSDEEKEDVALAESLLACAEKVGDQQFERASKLLSHCESLSSKTGSPVKRIVHYFAEALLHRIDRETGRGSSKDLHKGHSFDPEVAAKELNPAIVAFYEDLPFCQISVFTAVQAIIEDVAEAKKIHVIDLEIRKGGHWAILMQALESRHQCPVELLKITAIESGTTRHMVEDTGKRLKDFAQGLNIPFSFNIVMVPDLLDLREDLFEIDPEEAIAVYSQFALRAKIQQSDQLEIIMRVIRSLNPNVMVVAEIEANHNSTSFVNRFIEALFFFSAFFDCLEACMKRDEKNRMIIESLYLSHGIKNIVATEGAERKTRNVKIDVWRAFFSRFGMVEKELSTLSLYQADLVSKRFPCGSSCTFDKNGQCLLVGWKGTPINSVSVWKFI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01836 589 Pfam GRAS domain family 216 587 IPR005202 -
Viun6g01836 589 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 577 IPR005202 -
Viun6g01836 589 ProSiteProfiles GRAS family profile. 206 587 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01836 Viun-Chr6 25514566 25516667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01836 207 588 GRAS Transcription Factor Family AT3G03450 31.026 1.11e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun6g01836 GRAS 1.3e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01836 - - gmx:100818523 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01836 6 25514566 25516667 Viun6g01836 6 25514566 25516667 ECH