Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01827 ATGTCTGATATCTCGGAATATTCTCATTCATCGAATGCAGGCACGAGAAAGAAGAGGAGCAGAAGCAAAAAAAGGTTCAGCGATGGACAGGTGAAATCACTGGAATCCATGTTTGAGACAGACTCGAGACTTGAACCAGCAAAGAAATTGGAGGTGGCGAGAGAACTTGGCTTGCAACCAAGACAAGTTGCAATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTTCAAGCAGGTTCAGCGAGACTACACAACACTTCGGGCCAATTATAAGACGTTGGATTCACAGTTTCATGCTCTCAACAAAGAGTACCAATCAATGTTAATACAGTTGCAGGATCTGAAAAATCGATTACAGAAGCCACTAGAACAAACTGAGAGTTGCAGTACGGGACACAAAGCAGCAAACAGCATGGAGAGTGAAACTGGAAATGGAGAAACCATCAAAAGAGAACAGGAGATAAAGCAGCCAAGGATGACAACAGGAAAATCAGAAGACATTGTTTGTGGTATTATCTCCGACTGTGACAGAAGCATAAAGGCAAAACAATACTTTGGTGTGGAAGATGAAGCTTCTCTTCTGAACTTTGTCGAGAACACTGATGGTTCTTTGACAACATCAGAACATTGGGGTTTGCTAGAATCAGATGATTTCATGGGCCAATTAACCAGCTGTGATTACCAATGGTGGGACTTCTGGTCCTGA 705 0.427 MSDISEYSHSSNAGTRKKRSRSKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKFKQVQRDYTTLRANYKTLDSQFHALNKEYQSMLIQLQDLKNRLQKPLEQTESCSTGHKAANSMESETGNGETIKREQEIKQPRMTTGKSEDIVCGIISDCDRSIKAKQYFGVEDEASLLNFVENTDGSLTTSEHWGLLESDDFMGQLTSCDYQWWDFWS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01827 234 MobiDBLite consensus disorder prediction 124 159 - -
Viun6g01827 234 Coils Coil 97 117 - -
Viun6g01827 234 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Viun6g01827 234 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Viun6g01827 234 MobiDBLite consensus disorder prediction 144 159 - -
Viun6g01827 234 FunFam Homeobox-leucine zipper protein ATHB-7 5 77 - -
Viun6g01827 234 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Viun6g01827 234 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Viun6g01827 234 Pfam Homeobox associated leucine zipper 77 119 IPR003106 GO:0006355|GO:0043565
Viun6g01827 234 SUPERFAMILY Homeodomain-like 6 77 IPR009057 -
Viun6g01827 234 MobiDBLite consensus disorder prediction 124 143 - -
Viun6g01827 234 MobiDBLite consensus disorder prediction 1 38 - -
Viun6g01827 234 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Viun6g01827 234 CDD homeodomain 26 75 IPR001356 GO:0003677
Viun6g01827 234 SMART HOX_1 17 81 IPR001356 GO:0003677
Viun6g01827 234 Gene3D - 4 80 - -
Viun6g01827 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 152 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01827 Viun-Chr6 25414402 25415675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01827 25 234 Homeobox Transcription Factor Family AT3G61890 47.685 8.70e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun6g01827 Homeodomain 6.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01827 K09338 - gmx:100806279 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01827 6 25414402 25415675 Viun10g02206 10 36849995 36851156 PCT