Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01823 ATGAGCGTCTTTGCCATGATTCTTCTCACTCCCATATTTCTGTTAACCCTCGCCGCCGCCGCCTTCCTGTTCGCGGTGGCCGGAGCCGTGCTGTTCCAAACGGGGTGCGGCAAGAGGCTATGGAGAGGAATGGAAGATTGGTTCCACGTGTATCAATTCCTCACAGTACCTGAACTGAACCAAACCAAACACCACAACCACCTCTACTCCAAGCTCTCCCTATACTTACATTCCCTACCTTCTATCCAAGACTCCCACTTCGCCAACATCGTCACTGGGAAGAACCCAAACGACATCGTCCTCTGCCTCGCTCCCAACCAAACCATCCAGGACCATTTTCTCGGAGCCACAATCTACTGGTTCAGCCAACCCGCTCATCCCAACCCAGAAGGAACCGGAACCTACGTTCTCAAGATCAGGAAGGTGGACAAGCGTCGAATCCTCCGTCCTTATCTCCAGCACATTCACGCCGTGGCCGACGAAATCGAGCAGCAAGGGAAGCGCGACTTGCGCCTCTTCACCAACAGCGCCGATGAGTTTGGGCAGTGGAGATCCGTTCCGTTTACGCATCCTTCCACGTTCGACACCATCGCCATGGAACCGGATCTCAAAAACAAGGTCAAATCCGATCTCGAATCGTTCCTCAGAGCGAAACAGTACTACAACCGCCTCGGCCGCGTCTGGAAACGGAGCTTTCTCCTCTACGGCCCCTCCGGCACCGGAAAATCGAGCTTCGTCGCCGCCATGGCCAATTTCCTCTCGTACGACGTGTTCGACATCGACCTGAGTAAAATCCCTAGCGATTCGGATCTGAAATTGCTCCTCCTGCATACGACGCCGAAATCGGTGGTGGTGATCGAGGACCTGGACCGGTTTGTGGCGGAGAAAACGGAGAGAATAAGCGTTTCGGGGATACTAAACTTCATGGACGGGCTTATAACCTCGTGTTGCGCGGAGGAGAGGGTGATGGTGTTCACGATGAACACGAAGGAGCACGTTGACCCGAACCTGCTTCGTCCGGGTCGGGTCGATGTGCATATCCATTTTCCGCTTTGTGATTTTTCGGCGTTTAAGACGCTGGCGAACAGTTACCTTGGGGTGAAGGACCATAAGCTGTTCCCTCAGGTGCAGGAGATTTTCCAAAACGGTGCGAGTTTGAGTCCCGCTGAAATCGGCGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCTATTAGATCAGTCATCACCGCATTGCAAACGGACGGTGATGGTAGGGGGTGCGGCCTGACCGGACGGCAGAAGGAGGATGATGAAATGGGTGAACCGGATGGGGTTGTCTGCGGTGAGGGTGTCCATACGGTTAAGGATTTGCGGAGACTGTACAGTTTTTTCAGATTCAGGGTTACAAGAAAATCTTCGTCTTCCATTTCTTCCTTGCCCGCGAGTCCATTGCGATAG 1443 0.5385 MSVFAMILLTPIFLLTLAAAAFLFAVAGAVLFQTGCGKRLWRGMEDWFHVYQFLTVPELNQTKHHNHLYSKLSLYLHSLPSIQDSHFANIVTGKNPNDIVLCLAPNQTIQDHFLGATIYWFSQPAHPNPEGTGTYVLKIRKVDKRRILRPYLQHIHAVADEIEQQGKRDLRLFTNSADEFGQWRSVPFTHPSTFDTIAMEPDLKNKVKSDLESFLRAKQYYNRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLSYDVFDIDLSKIPSDSDLKLLLLHTTPKSVVVIEDLDRFVAEKTERISVSGILNFMDGLITSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFKTLANSYLGVKDHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIRSVITALQTDGDGRGCGLTGRQKEDDEMGEPDGVVCGEGVHTVKDLRRLYSFFRFRVTRKSSSSISSLPASPLR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01823 480 Pfam ATPase family associated with various cellular activities (AAA) 233 351 IPR003959 GO:0005524|GO:0016887
Viun6g01823 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 412 IPR027417 -
Viun6g01823 480 PANTHER BCS1 AAA-TYPE ATPASE 46 420 - -
Viun6g01823 480 Pfam Domain associated at C-terminal with AAA 44 122 IPR025753 -
Viun6g01823 480 Gene3D - 175 366 IPR027417 -
Viun6g01823 480 SMART AAA_5 228 353 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01823 Viun-Chr6 25392036 25394145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01823 224 349 Calmodulin-binding Proteins AT3G56690 29.787 3.29e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01823 - K08900 gmx:100776680 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01823 6 25392036 25394145 Viun10g02198 10 36737210 36739258 PCT