Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01812 ATGGCACCTTTCCATGCTGATGAGGCAAAGACGAGTATGCAACTTCAACCTTGCGCAGCTTGCAGAATGTTACGCCGCAGATGTGAGAGTAAGTGCGTACTCGCTCCGTATTTCCCAACCGATGAAGTTGAGAATTTTGCTCTAGTGCATAGAGTGTTCGGTGCTAAAAACGTTGTCAAAATTATTCAGAGGGTTGAGGAAGCAAAGAGAGGTGATGCAGTTAAATCCATGGTGTACGAGGCCATAGCAAGGGTTAGAGATCCAGTTTATGGGAGTGCTGGAGTTATTTATGAGTTACAGAAGATGATCGAGGAACTGAAGGCACAGTTGGATTCGATAAAAACACGGATCTCAGAGATTAGAGAAGAAAAGGAGCGATTGTTGAGCATTGGTAACAGTTACGATCCTTTATCTGACATCAATGTCCCTATGTTTGATTCTGCTATGGCCTCGGATCCGTTTGAATTTCATGTGGAAGGTGGCTGGCTATACAGCAATATCTCAACACCCTCCTAG 516 0.4438 MAPFHADEAKTSMQLQPCAACRMLRRRCESKCVLAPYFPTDEVENFALVHRVFGAKNVVKIIQRVEEAKRGDAVKSMVYEAIARVRDPVYGSAGVIYELQKMIEELKAQLDSIKTRISEIREEKERLLSIGNSYDPLSDINVPMFDSAMASDPFEFHVEGGWLYSNISTPS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01812 171 Coils Coil 96 130 - -
Viun6g01812 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 123 - -
Viun6g01812 171 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Viun6g01812 171 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01812 Viun-Chr6 25318792 25319404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01812 15 135 AS2 family AT1G07900 51.240 2.41e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun6g01812 LOB 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01812 - - vra:106754025 258.455