Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01808 ATGGCACATCTGGAAGCTCCCGTCAGAAGTGTGCCCAGTTCTCAGCCAGAAACAGGTGTGGGAGATGGTGATCTGTACACGCAGCTATGGAAGCTATGTGCGGGGCCTTTGGTGGATGTTCCTTGCGAAGGGGAGAGAGTTTTCTACTTCCCGCAGGGTCACATGGAACAATTGCAAGCTTCCACCAATCAGGGACTGAACCAGGAGCTGAGCCAGCAAATTCCTCATTTCAACCTCCCGTCCAAGATTCTCTGTCGTGTTGTTCACATTCAGTTGTTGGCGGAACAAGAAACAGATGAAGTTTATGCTCGTATCACTTTGCTTCCGGAGTCAAATCAAGAAGAGCCAACGAGTCCAGACCCAAGTCCACCCGAGACCCAGAAACAGAGTTTTCACTCTTTTAGTAAAATATTAACTGCTTCTGATACCAGCACTCATGGAGGATTTTCAGTTCTTCGGAGGCATGCTACCGAGTGTCTGCCTCCATTGGACATGACCCAAACTATCCCCACTCAGGAATTGGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCAAGGAGGCACCTGCTCACAACTGGCTGGAGTACATTTGTGACATCCAAGAGACTCGTTGCTGGAGATGCTTTTGTGTTTCTGAGGGGAGAGAATGGCGAACTGAGAGTTGGTGTTAGGCGTGTAGCACGACAGCAAAGTCCCATGCCTTCTTCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCATTTTTGACCAGTACCATGTTTGTGGTGTATTACAAGCCTAGGACCAGCCAGTTTATTATTGGTCTAAACAAATATCTAGAGGCAGTGAACAAGTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGTGGAGGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTTTCTCCAGGATGGCGGAACTCTCAATGGCGTTCGTTGAAGGTTCAATGGGATGAACCAGCAATAATTCCAAGGCCAGAGAGAGTTTCTTCGTGGGAGATAGAGCCTTTCGTTGCTTCCACTGCTCTGAATGTGACCCAACAAGTGGTGAAGAGCAAGAGATCCAGGCCTCCTGAGGTTTCGTCTTCTGAAATTGGCCCCAATTCCCCTGGTGCGGGTTTGTGGTATCATGGAGCATCGTTATCGCATGACCCTACTGCATTGGGTGGCAGTTCAGAGGTGGAAAGCAATGAAAGGGCAGTAATATGGTGTACAAGGATGAAAGAAATAAATGCGAATCCCATGAATGGTAACAAGAGCAGCTCGAGCAGAGTGGGTGTGGAAGGAATGTGGCCATCTTCCCCACATTTGAGTGTGTCTTCGAACCTTTTTCCGGACCCCAAAAACAGCAAAGCTGTGACAGCACAATCAACTGTCTCTGGGTATGCCCCTGTTTCATCTAGGACGAATGATGATTTGGCACATGATCCCGTGGAATGTGGTAAAAGAAGTGAGAATCCCATGGAGTGTTGGGTGTTCGGAGTTAATTTGACTAACAATTTTACTAATGTTGCCCTCCCCGATAAAGAACTAGGATGTCCACCTATAATAATTCCTAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAACTCAGCCTAGTCAGAATCACAATTATTCACTCTCCAATAAGCTGCACAACCAAATTATTTCTGATGGATCACCCAGTGAGAGACACGCCAAGCACCCCACACTACCATCCACCAGGACTCGGACCAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCTGTTGACCTCACTGTCCTAAAAGATTACGAGGCTCTCATAGACGAGCTTGAGAAAATTTTTGATATCAAGGGAGAGCTTCGAATGCAAACCAAATGGGTTATTACTTTCACTGATGATGAGAATGACATGATGCTCGCGGGTGATGATCCATGGCCTGAATTCTGTTGTATGGCGAAGAGGATTTTCATTTGTTCGAGGGAAGATGTGAAGAAGTTGAAAAGCAAGGATTCTGGTTGTTCATCAGAGGGTGAGGAGACTTTGTTGAGCCAAGATTCACAGAATAGGGAGGAAACTCAGCAAATCTCTTGCGATTTGACAGCTTAA 2154 0.4666 MAHLEAPVRSVPSSQPETGVGDGDLYTQLWKLCAGPLVDVPCEGERVFYFPQGHMEQLQASTNQGLNQELSQQIPHFNLPSKILCRVVHIQLLAEQETDEVYARITLLPESNQEEPTSPDPSPPETQKQSFHSFSKILTASDTSTHGGFSVLRRHATECLPPLDMTQTIPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRVARQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRTSQFIIGLNKYLEAVNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWRNSQWRSLKVQWDEPAIIPRPERVSSWEIEPFVASTALNVTQQVVKSKRSRPPEVSSSEIGPNSPGAGLWYHGASLSHDPTALGGSSEVESNERAVIWCTRMKEINANPMNGNKSSSSRVGVEGMWPSSPHLSVSSNLFPDPKNSKAVTAQSTVSGYAPVSSRTNDDLAHDPVECGKRSENPMECWVFGVNLTNNFTNVALPDKELGCPPIIIPSGPKDSIPVAACETQPSQNHNYSLSNKLHNQIISDGSPSERHAKHPTLPSTRTRTKVQMQGVAVGRAVDLTVLKDYEALIDELEKIFDIKGELRMQTKWVITFTDDENDMMLAGDDPWPEFCCMAKRIFICSREDVKKLKSKDSGCSSEGEETLLSQDSQNREETQQISCDLTA 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01808 717 MobiDBLite consensus disorder prediction 373 393 - -
Viun6g01808 717 MobiDBLite consensus disorder prediction 684 717 - -
Viun6g01808 717 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g01808 717 MobiDBLite consensus disorder prediction 472 494 - -
Viun6g01808 717 Pfam Auxin response factor 260 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun6g01808 717 Gene3D - 131 235 IPR015300 -
Viun6g01808 717 Gene3D - 294 366 - -
Viun6g01808 717 MobiDBLite consensus disorder prediction 472 491 - -
Viun6g01808 717 FunFam Auxin response factor 294 365 - -
Viun6g01808 717 MobiDBLite consensus disorder prediction 373 392 - -
Viun6g01808 717 MobiDBLite consensus disorder prediction 691 717 - -
Viun6g01808 717 Gene3D - 592 683 - -
Viun6g01808 717 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Viun6g01808 717 CDD B3_DNA 132 234 IPR003340 GO:0003677
Viun6g01808 717 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 683 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun6g01808 717 FunFam Auxin response factor 132 236 - -
Viun6g01808 717 SUPERFAMILY CAD & PB1 domains 591 671 - -
Viun6g01808 717 ProSiteProfiles PB1 domain profile. 595 676 IPR000270 GO:0005515
Viun6g01808 717 SMART B3_2 134 236 IPR003340 GO:0003677
Viun6g01808 717 MobiDBLite consensus disorder prediction 110 130 - -
Viun6g01808 717 Pfam AUX/IAA family 592 679 IPR033389 -
Viun6g01808 717 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
Viun6g01808 717 SUPERFAMILY DNA-binding pseudobarrel domain 125 263 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01808 Viun-Chr6 25291135 25295626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01808 21 682 B3 DNA Binding Superfamily AT4G23980 56.456 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun6g01808 B3 3.8e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01808 K14486 - gmx:100820503 1083.17