Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01805 ATGGACCATCAACCCTGCCCCGATGACGATCTAACCGCCGCCACCACCGCCACCGCGAGGTCCGGCACGCGCCACCCCGTCTACCGCGGCGTCCGCAAGCGCCGCTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCGCGCAAAAAGAACCGCATATGGTTGGGGTCTTTTCCGATGCCAGAGATGGCGGCTCGAGCGTACGACGTCGCAGCGTACTGCCTCAAGGGTCGGAAGGCGCAGCTCAACTTCCCCGACGAGGTGGACTCCCTGCCGCTTCCGCCGTCCCGCACGGCCAGGGACATTCAGGCCGCGGCGGCCCAGGCGGCGCGCATGATGAAAGCGGCTGGCAGTGACGTGAAAAGCAGCATTGCCGATGATGACGGAGACAGCGGCGGCGACGATTTTTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGCTGCTGGGGCTGCCCCGGGGGATCCTCGTGGATCACCTCCGGCGACATCGCCGATTGGACGGAGGAGGAGCTTTCGCCGCAGCAACCGTCGTTCCTGGCGTGTCTATAA 555 0.6523 MDHQPCPDDDLTAATTATARSGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPMPEMAARAYDVAAYCLKGRKAQLNFPDEVDSLPLPPSRTARDIQAAAAQAARMMKAAGSDVKSSIADDDGDSGGDDFWGEIELPELMDGECCWGCPGGSSWITSGDIADWTEEELSPQQPSFLACL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01805 184 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Viun6g01805 184 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Viun6g01805 184 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Viun6g01805 184 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Viun6g01805 184 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Viun6g01805 184 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Viun6g01805 184 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Viun6g01805 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 122 - -
Viun6g01805 184 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Viun6g01805 184 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01805 Viun-Chr6 25250866 25251892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01805 18 184 AP2-EREBP Transcription Factor Family AT1G01250 56.897 7.34e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun6g01805 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01805 K09286 - gmx:100802036 312.768