Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01804 ATGAAGATTGACGCGGGGTTAGGGCGCGTGGTGTGGGACGAGGGGGAGAAGGCCATGGTTGGGGCTGTTCTTGGTGGTCGAGCTCTGGAGTTCTTAACGACAAACTCCGTGTCGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGACGAGGGACTTCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAACGACTCAAATTTCAGTTGGAATTACGCGATTTTCTGGCAGCTCTCGCAGTCGAAATCCGGTGACTGGGTTTTGGGTTGGGGAGACGGGTGCTGCAGGGAACCCAACGAAGAAGAGGAGGGTGCGGTGAGAGGAAAGCTGAGGCTTCTTCGCGTGGACGAGGAGATGCAGCAGAGGATGAGGAAGGGGGTGTTGCAGAAACTGCACACTACTTTTGGAGGTTCGGATGAGGACAATTACGCCTTTGGCCTCGATCACGTGACCGACACCGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTCCCTCGGGGGCATGGTGGCCCAGGTAAGTGCTTCGTTTCCGGGAAGCATTTATGGCTGAAATCTATTTCTGATTACTGCGTGCGGTCTTCCTTGGTTAAATCCGCTGGAATTCAGACCATTGTTATGATCCCTACCGATTTGGGAGTGGTGGAGTTGGGTTCTGTGAGAGTATTACCCGAGAGTTTTGAACTCGTGCAGGCCGTTAAAGCTGTGTTCTCCACGCAGTGTTCGCCGTACCCTGGGGTGAACGTGAGCGCCGGAGGGAACGCCGTTTTTACCGGTTTGGCAATTGGGGATGGTAGTAAGGTAGATGGCGGAGTTCCAATTCCCAAACTTTTTGCAAACGCATCTGGCAATCGGACACATTTCAGAGAGAAACTTGCAGTTAGAAAAATGGATGATAACAGGCCCTGGGCAGGCCATGGCCTCCCCAATGGGAACAACCTTAGCAACAATCCGAATGCAAGGAATGGTCTTCATGTTCCGGGTTGGGCAGTGAATTCGGGTGTGAGACAGGGTGGTCCTGTTGAGATTTTTGCTTCGAGGGCATCCTCGAGCAGTGTTGCAGCGGAGCTGGCTAATGGTGGTAGACAGGATTTCAGGCTGGGCAACGGCTATCAAGCTCAAAGGCAGGTGCAAATGCAAATTGATTTTACCGGAGCCACTTCTAGGCCCTCTCATGTGAGACCGGTTGTTGGTGATTCAGAGCTTTCTGATGTTGAGGCCTCTTGCAAGGAGGAGCAACCCAGTGTTTTGGGTGAAAGGAAGCCCAGAAAGCGGGGTAGGAAACCTGCTAATGGAAGGGAAGAACCCCTGAATCATGTGGAGGCCGAGAGGCAGAGACGTGAGAAGCTCAACCAACGGTTCTATGCATTGAGATCTGTGGTCCCTAATATCTCCAAGATGGACAAAGCTTCGTTGTTGGGCGATGCCATTGCCTACATCAACGAGCTTCAGGCGAAGGTCAAGATCATGGAGACTGAAAGAGAGAGATTTGGAAGCACCTCGAAGGATGGATCAGTTTTGGAAGCTAATTCAAGATCTGAAAATAAAAATCAAGAGAAAGAAGCTCCTGACGTGGATATTGAAGCAGCTCAAGATGAGGTAACTGTAAAGGTGAGTTGTCCTTTTGATACTCACCCTGTTTCCAAAGTAATTCAAACACTCAGAGAGGCACAAATCAGTGTTGTAGAATCAAAACTTGCTGCCGCAAATGATACTGTTTTCCACACATTTGTAATTAAGTCCAAAGGACCCGAACAACTTACAAAGGACAAGTTGATTGCTGTTTTTTCCCCACCAGAATCCAACCAATTGCAGCCATTGTCATCAGTTGGATAA 1836 0.4984 MKIDAGLGRVVWDEGEKAMVGAVLGGRALEFLTTNSVSNESVLMAVGSDEGLQNKLSDLVERPNDSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEGAVRGKLRLLRVDEEMQQRMRKGVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFVSGKHLWLKSISDYCVRSSLVKSAGIQTIVMIPTDLGVVELGSVRVLPESFELVQAVKAVFSTQCSPYPGVNVSAGGNAVFTGLAIGDGSKVDGGVPIPKLFANASGNRTHFREKLAVRKMDDNRPWAGHGLPNGNNLSNNPNARNGLHVPGWAVNSGVRQGGPVEIFASRASSSSVAAELANGGRQDFRLGNGYQAQRQVQMQIDFTGATSRPSHVRPVVGDSELSDVEASCKEEQPSVLGERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMETERERFGSTSKDGSVLEANSRSENKNQEKEAPDVDIEAAQDEVTVKVSCPFDTHPVSKVIQTLREAQISVVESKLAAANDTVFHTFVIKSKGPEQLTKDKLIAVFSPPESNQLQPLSSVG 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01804 611 PANTHER MYC 39 594 IPR045084 GO:0003700|GO:0006355
Viun6g01804 611 MobiDBLite consensus disorder prediction 428 445 - -
Viun6g01804 611 MobiDBLite consensus disorder prediction 404 420 - -
Viun6g01804 611 Pfam Helix-loop-helix DNA-binding domain 438 484 IPR011598 GO:0046983
Viun6g01804 611 SMART finulus 440 489 IPR011598 GO:0046983
Viun6g01804 611 FunFam Transcription factor bHLH13 427 501 - -
Viun6g01804 611 MobiDBLite consensus disorder prediction 385 445 - -
Viun6g01804 611 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 237 IPR025610 -
Viun6g01804 611 MobiDBLite consensus disorder prediction 495 525 - -
Viun6g01804 611 CDD bHLH_AtAIB_like 431 496 - -
Viun6g01804 611 Gene3D - 428 499 IPR036638 GO:0046983
Viun6g01804 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 434 483 IPR011598 GO:0046983
Viun6g01804 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 433 497 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01804 Viun-Chr6 25228272 25231039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01804 7 611 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 46.948 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g01804 bHLH-MYC_N 1.3e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01804 - - gmx:100801502 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01804 6 25228272 25231039 Viun10g02166 10 36486661 36489565 PCT