Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01802 ATGAGTATGGAATCAGAAACTCAACGAAAAATAGAGGAAACAGTGTTGGACATACTGAACAAATCCAACATGGAAGAAGCCACTGAGTTCGGCATACGGCTCGCTGCCTCGGAGAGACTCGGTATCGACCTCTCCGACTCGATCAATAAACACTTTGTTAGAAGCATAGTTGAGTCGTATCTTCTCTCCATTATGGCCAATGGAAAGGCAGAGAAGAAGGAAAATGTAGTGAAGGTCGAGGCCGATGAGGAGACGGAGGCGCTGAAACTGAAGAGGGAAGATCCTGAACGTGTTATTTGTCATCTTTCGAGCAGGAGGAACGTGTCGGTGAAAGCATTCAGAGGGACATCACTAGTCTCATTTAGGGAGTTCTATATGAAAGATGGAAAACTACTTCCTGGTTCTAAAGGCATAAGTTTACCTTCTGAGCAATGGTCAATCTTCAAGAAGAGTGTTCCTGCAATAGAAGAGGCTATCATAAAGATGGAAGGAAGGATCAGATCGGAGCTTAATGGTAAGCAAAATGAAGATGGGTCAAATTCGGTTGTCGCGGCTGCTCCTCTTGAGCCTGTTATCCCTGTTGCTCCTCTTGAGCCTGTTATTCCTGTTGCTCCACTTGAGCCTATAGTCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTTCCATTTCTGGGCTCAGCAGATCAAATCACTATTGAAACAATTAAAGATTGAATATGTACTAACTGAACCATGCCCGAATGCTGCATTAGGGGAAGGTGCAAAGGCCGAAGACATTGCTGCAGCCAAGGCTGCAGAAAGGAGATGGTTGAATGATGATGTAGTGTGTTGTCGCAATATCTTGAGCCATTTATCCGATCCTCTTTTCAACCAGTATGTGAACAGAAAAATGAGCAGCAAGGAATTATGGGAAGAACTAAAGATGGTTTATCAGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATAGATGATGAAAAAACAGTGATTGAGCAAATCCGAGAACTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGAATATTCATTGACGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCATCCTGGAAGGACTTCTGCATCAGGTTATTGCGTGAGGAATATTTACCTTTCTGGAAGTTAATGGAATGCATACAGGTAGAGGAAGAATTTCGGTGTGGAGTGCAACGAGGGGGTGAACATTCTTACAGTATGGGATTTCACCAGGGCAATAGAGGTGGTGGACAGAGGAGGGTTGACTATAAGCCACTAGGAATCTGTAGGAATAGGCCAGAAATCAATGCCAGGAGCTTATCCTGTAATATATGTGGCAAGAGGGGACACATTTCAAAAAATTGCTGGAGAAGAACTGACAGGCAAACTAATGAGAGGAGAGCAGAAGAGGATGTGAGCACACCTACCACAGAAGTTGATACTCTGCCTTCTATTCCTACCGAGTAA 1497 0.4302 MSMESETQRKIEETVLDILNKSNMEEATEFGIRLAASERLGIDLSDSINKHFVRSIVESYLLSIMANGKAEKKENVVKVEADEETEALKLKREDPERVICHLSSRRNVSVKAFRGTSLVSFREFYMKDGKLLPGSKGISLPSEQWSIFKKSVPAIEEAIIKMEGRIRSELNGKQNEDGSNSVVAAAPLEPVIPVAPLEPVIPVAPLEPIVPIEVVRFDGKNFHFWAQQIKSLLKQLKIEYVLTEPCPNAALGEGAKAEDIAAAKAAERRWLNDDVVCCRNILSHLSDPLFNQYVNRKMSSKELWEELKMVYQYEEFGTKRSQVKKYIEFQIDDEKTVIEQIRELNGIADSIAASGIFIDDNFHVSVIISKLPPSWKDFCIRLLREEYLPFWKLMECIQVEEEFRCGVQRGGEHSYSMGFHQGNRGGGQRRVDYKPLGICRNRPEINARSLSCNICGKRGHISKNCWRRTDRQTNERRAEEDVSTPTTEVDTLPSIPTE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01802 498 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 5 165 IPR045125 GO:0003713|GO:0060261
Viun6g01802 498 Pfam DEK C terminal domain 7 61 IPR014876 -
Viun6g01802 498 MobiDBLite consensus disorder prediction 469 484 - -
Viun6g01802 498 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 5 62 IPR014876 -
Viun6g01802 498 Pfam gag-polypeptide of LTR copia-type 272 401 - -
Viun6g01802 498 SUPERFAMILY Retrovirus zinc finger-like domains 440 472 IPR036875 GO:0003676|GO:0008270
Viun6g01802 498 SUPERFAMILY ssDNA-binding transcriptional regulator domain 99 161 IPR009044 GO:0003677|GO:0006355
Viun6g01802 498 Gene3D Transcriptional Coactivator Pc4; Chain A 90 167 IPR009044 GO:0003677|GO:0006355
Viun6g01802 498 MobiDBLite consensus disorder prediction 469 498 - -
Viun6g01802 498 ProSiteProfiles Zinc finger CCHC-type profile. 452 465 IPR001878 GO:0003676|GO:0008270
Viun6g01802 498 Pfam Transcriptional Coactivator p15 (PC4) 100 150 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01802 Viun-Chr6 25212411 25215630 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Viun6g01802 Retrotran_gag_2 2.4e-14 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01802 - - var:108341934 881.322