Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01783 ATGAACTTCTTGAAGCTCCTGTTCCACTGCTTCATACCTTTTGCTGTCGCATATGCATCATCTGATTGCCAATATTATTCTTGGTGCAGCGACAACAACATCCTTATTCGTTTTCCCTTCCAAATACAAGGTCTGCAACATCCTTATTGCGGCTACCCTGGTTTCCAACTAACATGTTCCAATGATAGCAAAACAGTTATAACACTTCCTTACATGGGAAAGTTCTTTGTCCGCAACATTAACTACCTCAGACAAGAGATGCAAGTGTATGACCCAGATGATTGCCTTCCAAAACGTCTTCTAAGCCTCAACCTTTCGGCTTCTCCCTTCATTGTTACTTCACTCCGCAACTACACCCTCTTCAGCTGCCCAACTCCGCACACAGGGTCGCAATTCATTCCCATTGATTGTCTCAGCAATTCAACGTCTTTTGTGTCGGCTATTCCTTCACTCAACTTCACCACTTCGTTGCCCGACTCCTGCCATGTTCTAAAGAAACTATCATTTCCAGTTGCATACCAGCAAAATTTCAGTGATGATCTCCTTAGTGGGGATCTTCTATTAACATGGTCTTCACCTGATTGTAGATATTGCGAATCACAACAAGCTCTGTGCGGATTTCAGAGCATAAACAGTGATCAAGTTAGTTGTTTCTTTGATTACCAAACGGGAGGTGCAGAACATGGTCTTCGAGTTTTTGGAATCATCACATTATCCATCGTTGGACCAGCTATCATGTGTGCCATTGCAATGGCATGCTACGCCTCCTTCAAGTACAGAAGAGGCAACACAGCCAGAATTTCTGCAGCACAGAGGTCTGCACCAACTGAAATAGCCGAAGCTGGCACCGTTAGGATGGGTCTGGATGAGTCTACAATCGAGTCGTATCAGAAACTGGAGTTAGGGGAAAGCCGAAGAGTTCCAGGACCCAATGAAGGATGTTGCACCATATGTTTGTCAGAGTATAAAACCAAAGACACGATACGATGCATTCCTGAATGTGCACATTGCTTCCATGCTCACTGCATCGATGAATGGCTTCGCATCAACACTACATGCCCTCTCTGCCGCAACTCTCCCTCTGCAGTTCTACCTGTGTCCACTGATCATTGA 1113 0.4492 MNFLKLLFHCFIPFAVAYASSDCQYYSWCSDNNILIRFPFQIQGLQHPYCGYPGFQLTCSNDSKTVITLPYMGKFFVRNINYLRQEMQVYDPDDCLPKRLLSLNLSASPFIVTSLRNYTLFSCPTPHTGSQFIPIDCLSNSTSFVSAIPSLNFTTSLPDSCHVLKKLSFPVAYQQNFSDDLLSGDLLLTWSSPDCRYCESQQALCGFQSINSDQVSCFFDYQTGGAEHGLRVFGIITLSIVGPAIMCAIAMACYASFKYRRGNTARISAAQRSAPTEIAEAGTVRMGLDESTIESYQKLELGESRRVPGPNEGCCTICLSEYKTKDTIRCIPECAHCFHAHCIDEWLRINTTCPLCRNSPSAVLPVSTDH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01783 370 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Viun6g01783 370 Pfam Ring finger domain 315 357 IPR001841 -
Viun6g01783 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 362 IPR013083 -
Viun6g01783 370 CDD RING-H2_EL5-like 314 357 - -
Viun6g01783 370 Pfam Wall-associated receptor kinase C-terminal 177 219 IPR032872 -
Viun6g01783 370 SMART ring_2 315 356 IPR001841 -
Viun6g01783 370 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
Viun6g01783 370 SUPERFAMILY RING/U-box 314 360 - -
Viun6g01783 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 361 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01783 Viun-Chr6 25075073 25077320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01783 29 363 C3H Transcription Factor Family AT2G25410 43.875 8.44e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01783 - - gmx:100799895 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01783 6 25075073 25077320 Viun10g02153 10 36356093 36358817 PCT