Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01782 ATGGAGCATCAGGACAGCAAGATATACAACCTGTTCGTGAAACACTTGGATGGAAAAACCCTAACCCTCTTATTTCCCTCTCCGATCCTCTGCGTGAGTTTCATCAAGGATCGCCTTTTCGAACTCACTGGAATTCCCGTGCAGCACCAGCGCCTCGTCACCGGATTCCGAAACCTCAACGACGTAATCCAATGCTCCCCAGGAGATGGCAACATGTTCCCGTCCGTGCGGCTGCTGCTGCGTCTCAAAGGCGGAAAGGGAGGCTTCGGGTCGCTTCTTCGTGGCGCCGCGACGAAGGCCGGGCAGAAAAAGACCAACAATTTCGACGCCTGTCGGGACATGAGTGGTCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTAGAGGAGTGGAAGGCCGGAGAAGAGGAGAGAAAACTCGAGAAGGTGGCGGAGGAGTTTCTCAAGAAGCAAATGAAGAAGGGTAAGGGTAAGGGAAAGGCTCAAGGTGATGGTGAAGCTCACAAATACGTGGAGAAATATCGGGCGGAATCTGAACGATGCGTTGCGGAGGTTGCCTTGTCCGTTAAGGAGGCTCTCACTGCCAAACGCAAGACACCTTCACAACCCCAACACGATGCCAAGAAGTTAAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGACAGTGATTATAGTGATGATTCTGATGTAGAGGGGAAAATGGAGAAATCAGATTTATTGAATGACCAGAATAAGTCTGAGTCAACTATGGCTGAGGGCAGTCTGGGTTCGGTGACTGGTGGAGGAGGCGCCTCTGGTTCTGGCTCGTGTGAAAGTGGCTCCGAGGAAGAGAAGGAAACTATTGTACAAGGAAATGTGGGATCTGTTGGGTTGCTAAGTGATGAAAGTATTCAGCCCGTGGACGAGCCTATGGTAAGCAATGAAGCTATTGATGGTGCTGTGACTCAGGTCTCAAATATTACAGGCTCTGAAACTGTGGCCACTGGCGACTCTAATAATGATATGGAAATTGATGGATCATTTGAGCATAAAGCAGCAGTCAATGAAGAGAACTCGCCAAGCACTAGTGTTCCCGCGATGGATGAGCCCCTGAATTTTGATGCATTTAATTCCTCTTCCGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGGGCTGCCAGGCTGTTTCTTCTAAAAAACACTCCTCTGGATAAACTTCCAAAGAAGCTGCTCGCTAAGAAGTAA 1281 0.4941 MEHQDSKIYNLFVKHLDGKTLTLLFPSPILCVSFIKDRLFELTGIPVQHQRLVTGFRNLNDVIQCSPGDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERKLEKVAEEFLKKQMKKGKGKGKAQGDGEAHKYVEKYRAESERCVAEVALSVKEALTAKRKTPSQPQHDAKKLKIWMGKRKLNESDSDYSDDSDVEGKMEKSDLLNDQNKSESTMAEGSLGSVTGGGGASGSGSCESGSEEEKETIVQGNVGSVGLLSDESIQPVDEPMVSNEAIDGAVTQVSNITGSETVATGDSNNDMEIDGSFEHKAAVNEENSPSTSVPAMDEPLNFDAFNSSSELEVLGLERLKSELQSRGLKCGGTLQERAARLFLLKNTPLDKLPKKLLAKK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01782 426 Pfam Replication stress response SDE2 C-terminal 350 425 IPR025086 -
Viun6g01782 426 MobiDBLite consensus disorder prediction 220 300 - -
Viun6g01782 426 PANTHER SPLICING FACTOR SF3A-RELATED 10 425 - -
Viun6g01782 426 MobiDBLite consensus disorder prediction 245 273 - -
Viun6g01782 426 SUPERFAMILY Ubiquitin-like 4 83 IPR029071 -
Viun6g01782 426 CDD Ubl_ubiquitin_like 11 61 - -
Viun6g01782 426 MobiDBLite consensus disorder prediction 220 244 - -
Viun6g01782 426 Gene3D - 4 85 - -
Viun6g01782 426 Pfam Silencing defective 2 N-terminal ubiquitin domain 71 153 IPR024974 -
Viun6g01782 426 ProSiteProfiles Ubiquitin domain profile. 9 85 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01782 Viun-Chr6 25070404 25073316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01782 359 425 C2H2 Transcription Factor Family AT5G06160 46.269 7.28e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01782 K25059 - gmx:100799364 571.622