Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01780 ATGAATGGAAAAGAACATAGATTTGTGAGGTTTGAAGACTGGAAATCGGAGTCATCTTTTAGTATAGAGCAAAACGATGAAAATCACAGAAGAAGACCAAGTGTGATTGAAGTTTTGAAGAGTATAGGAAGAAAGGTTGAGGGTAGTTCAGAGAAGATGAAGAACTTGAGAAGAGTTTCAGTTGTTCATCCCTTAAGTGATGGACAGAAAAAGTTGCCACCTAGGAAGAAAATTCTTGATCCACAGAGTTCAATGCTTCAGAAATGGAACAAAATCTTTGTAATATCGTGTGTGTTGGCAGTCTCTGTGGACCCGTTCTTCTTTTACATTCCAGTGATTGATGATGATAAAAAATGCCTTGATTTGAGTGGGTCATTGCAGATCACTGCCAGTGTTTTTCGCACCTTCTTTGATCTATTCTACATTCTTCACATAATATTTCAGTTTAAGACTGGGTTTATTCCCCCTTCTTCTCGAACTTTTGGAAGGGGTGAACTCATTGATGATCCTGTGGCTATAACCAAAAGATACTTAACTTCATACTTCTTCATCGACATTCTATCAATTATTCCACTTCCACAGGTGATTGTTCTAGCCATACATCCAAACATGAAAACAGATCCATTTGTAGCAAAGGATTTGTTGAAGTATTCAGTATTAATCCAGTATGTGCCAAGGCTTCTGCGGATCCATCCACTGTTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCAGGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGCCATGTAGTTGGAGCTTTCTGGTATTTGCTCTCAGTAGAGTCAGAGCTGCGTTGCTGGCGCAGACAGGTGAAGGGTGTAAGCTTGAGTTGTAGAAACCGCACCCCAGATGTCATTACAGCTCTTAATCAAACTTGTTCTTTGGTTGACCCTGATGATATCAAAGACCGACAAAGCTACAACTTTGGAATCTTTTTTGATGCTTTACATTCACGTGTGGTTCAATCAACCACAGATTTTCCTGAGAAATTCTTCTATTGCTTTTGGTGGGGTTTGCGTAATTTAAGTTCTCTTGGACAAGATCTCAAGACAAGTACTTATGTGCCAGAGATAATCTTTGCAATCTTCATTGCCATCTTTGGATTAGTTTTATTCTCGTTACTTATTGGAAACATGCAGAAATATTTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCACCGTATGCTACCTGAGAATTTGAAGGATAGAATTAGACAATATGAACAGTATCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTGATTCGTAACCTTCCAAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGTCTAGCTTTGGTTAAAAAGGTGCCGATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATTTGCACCAGACTGAAGCCAGTTCTTTATACTGAGAAGAGCCACATTTTTCGTGAAGGAGATCCAGTGGATGAGATGCTTTTCATTATGCGTGGAAAAGTGTCTACTGTGACGACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTGTTTCTGAAAGCTGGTGACTTCTGCGGAGAGGAGCTTCTGACATGGGCCTTGGATCCTAACTCCTCCTCGAATCTTCCCATTTCAACTAGGACAGTGGAAACCATATCAGAGGTTGAAGCCTTTGCTCTCATGGCGGATGATTTGAAGCTTGTTGCCTCCCAATTTCGCCGTCTTAGCAGCAAACAGCTCCAACACGCTTTCAGGTTCTATTCCTCACAGTGGAAGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGGCTGAGAGGTCTTTAAACGTAGAAGAAGACAAGCTACAAGATGCTTTGGCAAATGATGACGGCGCTACTCTGAGCCTTGGTGCAACCTTATATGCATCAAGGTTTGCTGCCAATGCACTGCGAAACCTCAGAGAAAACAACAGACAGAATAGAATGCAACAGAGACTACTGCCTCTGCTACCTCCAAAACCAGCCGAGCCAGATTTCACTTCTCTGAAACACTAA 2118 0.416 MNGKEHRFVRFEDWKSESSFSIEQNDENHRRRPSVIEVLKSIGRKVEGSSEKMKNLRRVSVVHPLSDGQKKLPPRKKILDPQSSMLQKWNKIFVISCVLAVSVDPFFFYIPVIDDDKKCLDLSGSLQITASVFRTFFDLFYILHIIFQFKTGFIPPSSRTFGRGELIDDPVAITKRYLTSYFFIDILSIIPLPQVIVLAIHPNMKTDPFVAKDLLKYSVLIQYVPRLLRIHPLFKEVTRTSGILTETAGAGAAYNLFLYMLASHVVGAFWYLLSVESELRCWRRQVKGVSLSCRNRTPDVITALNQTCSLVDPDDIKDRQSYNFGIFFDALHSRVVQSTTDFPEKFFYCFWWGLRNLSSLGQDLKTSTYVPEIIFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKDRIRQYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAICTRLKPVLYTEKSHIFREGDPVDEMLFIMRGKVSTVTTNGGRTGFFNSLFLKAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMADDLKLVASQFRRLSSKQLQHAFRFYSSQWKTWAACFIQAAWRRYWKKKAERSLNVEEDKLQDALANDDGATLSLGATLYASRFAANALRNLRENNRQNRMQQRLLPLLPPKPAEPDFTSLKH 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01780 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 67 700 - -
Viun6g01780 705 Gene3D Helix hairpin bin 404 468 - -
Viun6g01780 705 Coils Coil 629 649 - -
Viun6g01780 705 SMART cnmp_10 477 608 IPR000595 -
Viun6g01780 705 SUPERFAMILY Voltage-gated potassium channels 80 399 - -
Viun6g01780 705 ProSiteProfiles cAMP/cGMP binding motif profile. 477 561 IPR000595 -
Viun6g01780 705 Gene3D Jelly Rolls 475 595 IPR014710 -
Viun6g01780 705 FunFam Cyclic nucleotide-gated ion channel 1 475 593 - -
Viun6g01780 705 MobiDBLite consensus disorder prediction 682 705 - -
Viun6g01780 705 Pfam Ion transport protein 89 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun6g01780 705 SUPERFAMILY cAMP-binding domain-like 406 602 IPR018490 -
Viun6g01780 705 FunFam Cyclic nucleotide-gated ion channel 1 404 468 - -
Viun6g01780 705 Pfam Cyclic nucleotide-binding domain 498 587 IPR000595 -
Viun6g01780 705 CDD CAP_ED 477 608 IPR000595 -
Viun6g01780 705 Gene3D - 91 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01780 Viun-Chr6 25058863 25063064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01780 1 702 Ion Channels AT5G53130 63.004 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01780 K05391 - gmx:100797784 1155.97