Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01767 ATGGGATTCAAAACGAAATATGGAGATGATTCTGACAGATCAAAAGGTAATGTATGTTTGTATTGTCATTGTATCAGTGTATTTTGTATGTGTATGTATTTGATGGTTATGGATGGTTATGGTGGTCAGGGTGATGTTATCCCTGCTATGATTAAGAAGGAAGACATTGCTAGGGAAGACAAGCTAAAGGAAGGAGAAAGTTATATAATGCATAACTTCAAAATTCTCAACAACAGAGCTCAATATAGAGTTTGCGACCACCCTTATAAGCTATTGTTTATTGGAGCAACATCTGTACGACGACAACCAATTGCCAGTATTCCTGCAAAAGTTTGGAAGTTCAAGAGTATAAAGGATATCATTGATGGAAACTATTCTGCAGATTTGTTGGTTGATGTCATTGGTGTGGTGGATAATGTGGAGGAGAAACCAAGTTCCAAAAATGTTGTGTTTGACCTAAAGGACTTGAGTGGTGCGTCAATCTGTTGTACTCTTTGGGATTCATATTGTTTGCGTTTGGTTAGTTATTGGAGGGAAAGTCGTGACACAACTTATCCAGCTATTATTCTTACTCAGGCAAAGATAAAGGCTGCCTCAGGTCCATGGCCGGTGTCATTGTCTAATTGTTGGAATGGATCGAAGTTGTTTATGGGAGATGATATATCAGAACTGATTGAATTTAGGAAGGAATTTTCAAAAACTACTGCTCATGAAATTTTCGAGGAGGGAAGCCAATATAGTGGATCTTCCCAGATTAGTCATGTTGATAGGTTTATGTATAAAACTGTTGTTAAGAGTGTTTCACAGATCCTGACTGTGATAGAGGAGATTTCATGTGTTACTGTTGCACATACACTTAAATTTAATTTAGGAAATGATGGATGGAGTTACTTGGTTTGTAACTTATGCGCAAAAAGAACATATGAAGTTGGTTCTTTTAAGTGTTTGAATTGTGATGGTTATAATGAGTATCCAAAAATGAGGTACAAGCTTGAAATTCAAGTGACTGATGGAAAAAAGGTTGCTAACTTCATGCTTTGGGACCAAGACTGCATCAATTTAATTGGTCTTTCTGCTGGTGACTTGCGAAAGAAAATGATCAAGGATGGTGAGGAGGATCCTAAGTGTTTTCCACAGGATCTAGACGTTCTTTTGGGTTGTACTTTGGCTTTCAAGGTCAAGCCACAAGGAAATAACCGACCTGCTTCAGTAATGAGAGTTTCAACTGATCGTGAAATCATAGGACACATTAGTAGTCTTCTTGGACAAACTGAGGTAATGGAAATTGTTGAAGCTAAGGAAAACTGTTCTGATCAATCAGAGCTTCGTAAGGGCAAGTCCATAGCAATTGAGGTTGGGAAACGTAGGAGTGCCAGTGAATCTGATGTCCATACTCATACTGGGAGTTCTTTAGTAAGTATTTTAATGTAG 1431 0.3788 MGFKTKYGDDSDRSKGNVCLYCHCISVFCMCMYLMVMDGYGGQGDVIPAMIKKEDIAREDKLKEGESYIMHNFKILNNRAQYRVCDHPYKLLFIGATSVRRQPIASIPAKVWKFKSIKDIIDGNYSADLLVDVIGVVDNVEEKPSSKNVVFDLKDLSGASICCTLWDSYCLRLVSYWRESRDTTYPAIILTQAKIKAASGPWPVSLSNCWNGSKLFMGDDISELIEFRKEFSKTTAHEIFEEGSQYSGSSQISHVDRFMYKTVVKSVSQILTVIEEISCVTVAHTLKFNLGNDGWSYLVCNLCAKRTYEVGSFKCLNCDGYNEYPKMRYKLEIQVTDGKKVANFMLWDQDCINLIGLSAGDLRKKMIKDGEEDPKCFPQDLDVLLGCTLAFKVKPQGNNRPASVMRVSTDREIIGHISSLLGQTEVMEIVEAKENCSDQSELRKGKSIAIEVGKRRSASESDVHTHTGSSLVSILM 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01767 476 SUPERFAMILY Nucleic acid-binding proteins 279 399 IPR012340 -
Viun6g01767 476 Gene3D - 106 242 IPR012340 -
Viun6g01767 476 Pfam Domain of unknown function DUF223 34 127 IPR003871 -
Viun6g01767 476 SUPERFAMILY Nucleic acid-binding proteins 113 232 IPR012340 -
Viun6g01767 476 Gene3D - 243 421 IPR012340 -
Viun6g01767 476 Pfam Replication factor-A C terminal domain 291 372 IPR013955 -
Viun6g01767 476 CDD RPA1_DBD_B_like 132 229 - -
Viun6g01767 476 CDD RPA1_DBD_A_like 18 99 - -
Viun6g01767 476 Gene3D - 29 102 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01767 Viun-Chr6 25007633 25010539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01767 60 394 Core DNA Replication Machinery Family AT4G19130 21.547 2.72e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01767 - - vun:114188551 972.23