Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01745 ATGGAAGAATCCAATTTGAGTGAGGAGAAAATTGTCATTTACAAGCATGTCGACCATGGCATTTTGAACCAGACACCAAAGGTAGTTCGGATTTCGATGAAGGACCCCGATGCCACAGATGATGAAGATGAAGATGAAGGATTTGTTAACCTTCTTAAGACAAAGAAGATTGTGAATGAGATCAGAATTGTGGAGAAGAAACCTTCCACCAGTGTGACAGTGAAACAAACTAAAGAGCCTGGTAGAAGAAAGTTTAGAGGAGTTCGTCAAAGGCCATGGGGAAGATGGGCGGCAGAAATCAGAGATCCTGTCAAGCGATCAAGAATCTGGTTAGGAACTTATGACACTGCTGAAGAAGCTGCCATGGTTTACGACAAAGCAGCAATTAGTTTTCGAGGTTGTCATGCTCTTACTAATTTTATCAAGCCTCCTACAAGTGAAGACATGGACATGTCTCCTGCAATGGAAGACATGCACCACAACACTCCTACAAGCGAAGACATGCACATGGATGCTGTTTCTTTTGAATATGGTTGTTATGATGAATCTCAAGGTAGTTGGAGTGGTTTGGTTGAGAATGTGAGTGGTGGGACTGGTTCAACTAGAGAGTCTCATTTGTCTTCACCCACTTCTGTTCTGGGACTTCAACATGAGAAACATGAGAAACTTGTGTCAGAAGAAGTTTTTGAAACAGATGGTTTGTTTATAGAAGATCCAAGTTTTGAAGATACTTTCTCCTTTTTAGATTTATATTCACCATCCATTGATTTTGATTCTGGAAACAATTTCATGAATGTGATGGTTGACACTAATGTAAAACATTTTGATGAAAATCTGTGTGATATTTCCCCTCTTGGCAATGAGAATTTTCAATCATTCAACTGGGATATAGATAGTTACTTCAATGATCTCTCTCCTCCTTAA 924 0.395 MEESNLSEEKIVIYKHVDHGILNQTPKVVRISMKDPDATDDEDEDEGFVNLLKTKKIVNEIRIVEKKPSTSVTVKQTKEPGRRKFRGVRQRPWGRWAAEIRDPVKRSRIWLGTYDTAEEAAMVYDKAAISFRGCHALTNFIKPPTSEDMDMSPAMEDMHHNTPTSEDMHMDAVSFEYGCYDESQGSWSGLVENVSGGTGSTRESHLSSPTSVLGLQHEKHEKLVSEEVFETDGLFIEDPSFEDTFSFLDLYSPSIDFDSGNNFMNVMVDTNVKHFDENLCDISPLGNENFQSFNWDIDSYFNDLSPP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01745 307 PIRSF PTI6 243 302 IPR017392 GO:0003700
Viun6g01745 307 PIRSF PTI6 5 230 IPR017392 GO:0003700
Viun6g01745 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 219 - -
Viun6g01745 307 FunFam Ethylene-responsive transcription factor 2 83 142 - -
Viun6g01745 307 SUPERFAMILY DNA-binding domain 84 140 IPR016177 GO:0003677
Viun6g01745 307 CDD AP2 84 140 IPR001471 GO:0003700|GO:0006355
Viun6g01745 307 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Viun6g01745 307 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Viun6g01745 307 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Viun6g01745 307 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Viun6g01745 307 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Viun6g01745 307 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01745 Viun-Chr6 24863120 24864043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01745 7 304 AP2-EREBP Transcription Factor Family AT4G27950 32.551 8.19e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun6g01745 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01745 - - vum:124824749 486.493