Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01712 ATGAATTGTTTTCCGTGTTTTTCAAAGACTAAGAAATGCAATAGCAAGAGGGAGCAGCAACCGACCACACAACCAGAAAACGTTATAGCAACAAAACCTCCGGACGTAAGAAAACCAAAGGCAGATGATCCAAACAACGTTGACACTACAAATATTCAAGCACAAAATTTCACGTTCCGTGAACTAGCCATCGCGACGAAGAATTTCCGACAAGAATGTTTGATGGGTGAAGGTTGCTTTGGCAGAGTTTACAAGGGAACAATTCCTGCAACCGGGCAGGTGGTAGCAGTGAAGCAACTTGACCGAAATGGGGTACAAGGAAGTAAGGAATTTCTGGTTGAGGTTTTGATGTTAAGCCTCTTGAACCATGAAAACCTCGTCAAACTCACTGGTTATTGTGCTGATGGAGATCAACGTCTTCTGGTGTATGAGTTCATGCCAGGTGGCTCTTTAGAAGCCCGTCTTCTTGAGAGGAAACCAGATGAACCTCCATTAGATTGGTACAGCAGAATGAAAATAGCATCACATGCTGCGAAAGGATTGTGGTACTTGCACGACAAGGCCAACCCTTCAATTATATACCGAGACTTGAAATCTGCAAACATCTTGCTAGGTGACGATTTCAGTGCAAAACTATCAGATTATGGATTGGCCAAACTTGCTGGCAACGATAAAGCGAACATTGTACCCACAAGAGTTATGGGCACTTATGGTTACAGTGCTCCTGAGTACGTAAGAACAGGTAACCTCACATTGAAATCAGATGTCTACAGTTTTGGAGTTGTCTTGCTAGAGCTCATTACCGGACGGCGCGCGGTTGACACCACAAGATCACACGATGAGCAAAACCTAGTTTCATGGGCACAACCCATATTTAGGGATCCAAAGAGATATCCAGATATGGCAGATCCAAATTTGAATAATGATTTCCCAGAAAAGGATTTGAACCAAGTTGTTGCAATAGCAGCGATGTGCTTGCAGGAGGAAGCAGCGGCGCGTCCTTTGATGAGTGATGTTGTAACTGCTCTGAGTTTTCTTTCCACTGCCAATACAGAGGGTGGTGCCGACAACAGTAGCTACTCCGGTGGAGACAGCGATGACAGTGGATCTGCTAAAAAACAGTCTTGA 1128 0.4441 MNCFPCFSKTKKCNSKREQQPTTQPENVIATKPPDVRKPKADDPNNVDTTNIQAQNFTFRELAIATKNFRQECLMGEGCFGRVYKGTIPATGQVVAVKQLDRNGVQGSKEFLVEVLMLSLLNHENLVKLTGYCADGDQRLLVYEFMPGGSLEARLLERKPDEPPLDWYSRMKIASHAAKGLWYLHDKANPSIIYRDLKSANILLGDDFSAKLSDYGLAKLAGNDKANIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRSHDEQNLVSWAQPIFRDPKRYPDMADPNLNNDFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTANTEGGADNSSYSGGDSDDSGSAKKQS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01712 375 FunFam probable serine/threonine-protein kinase RLCKVII 41 145 - -
Viun6g01712 375 ProSiteProfiles Protein kinase domain profile. 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01712 375 MobiDBLite consensus disorder prediction 350 369 - -
Viun6g01712 375 PANTHER OS07G0668900 PROTEIN 3 352 - -
Viun6g01712 375 MobiDBLite consensus disorder prediction 350 375 - -
Viun6g01712 375 Pfam Protein kinase domain 71 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01712 375 MobiDBLite consensus disorder prediction 14 49 - -
Viun6g01712 375 Gene3D Transferase(Phosphotransferase) domain 1 146 361 - -
Viun6g01712 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Viun6g01712 375 FunFam Serine/threonine-protein kinase PBS1 146 361 - -
Viun6g01712 375 CDD STKc_IRAK 75 343 - -
Viun6g01712 375 SMART serkin_6 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01712 375 Gene3D Phosphorylase Kinase; domain 1 34 145 - -
Viun6g01712 375 SUPERFAMILY Protein kinase-like (PK-like) 46 346 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01712 Viun-Chr6 24728831 24731736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01712 1 349 Glycoside Hydrolase AT3G07070 65.000 4.46e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun6g01712 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01712 - - vra:106754031 667.537